View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6217_low_6 (Length: 389)
Name: NF6217_low_6
Description: NF6217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6217_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 378
Target Start/End: Complemental strand, 26449626 - 26449260
Alignment:
| Q |
12 |
acatcatcttctgcaatctaatgtggatacctacatcaaagattcaaattggaatgttcctcaagcttctttgcctgcatatcctgctttgcagcagaaa |
111 |
Q |
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| T |
26449626 |
acatcatcttctgcaatctaatgtggatacctacatcaaagattcaaattggaatgttcctcaagcttttttggttgcatattctgctttggagcaaaaa |
26449527 |
T |
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| Q |
112 |
ctattgttgactactatacttattttccctaaagaagataaactaatatagaaagcctctcatgatggaaatctagcttttaaagacgcatatctcttcc |
211 |
Q |
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|||||| |||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26449526 |
ctattgatgactactatacctattgtccctaaagaagataaactaatatggaaagcctctcatgatggaaatttagcttttaaagacgcatatctcttcc |
26449427 |
T |
|
| Q |
212 |
tgacttccaatcagcctcagaacatcagttgggccaaagtcatttggcacattgctatccctccttctaagtccgtgcttgtttggagactgttgcataa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26449426 |
tgacttccaatcagcctcagaacatcagttgggccaaagtcatttggcacattgctatccctccttctaagtccttgcttgtttggagactgttgcataa |
26449327 |
T |
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| Q |
312 |
caagcttcctacagatgatgacctctctcttagaggctttcatactacatccatttgcaatctctgt |
378 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26449326 |
caagcttcctacagatgataacctctctcttagaggctgtcatactacatccatttgcaatctctgt |
26449260 |
T |
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