View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6217_low_8 (Length: 261)
Name: NF6217_low_8
Description: NF6217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6217_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 55310284 - 55310529
Alignment:
| Q |
21 |
agaaatataacaaagatataaaaacataaggaagagggatggtatacctgtttgatggtaagcataggcttgagctgaaataagggaaaaatgtaaagtt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55310284 |
agaaatataacaaagatataaaaacataaggaagagggatgatatacctgtttgatggtaagcataggcttgagctgaaataaggaaaaaatgtaaagtt |
55310383 |
T |
|
| Q |
121 |
ggatgggaaagaaaata-agaaatatgaatgaaacggggaataaacagaaccacaaattgtatgcttataaagaagagnnnnnnnccacgaattgtatga |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
55310384 |
ggatgggaaagaaaatagagaaatatgaatgaaacggggaataaacagaaccacaaattgtatgcttataaagaagaagaaaaaaccacgaattgtatga |
55310483 |
T |
|
| Q |
220 |
atggttt------ctggccgccaaggatcgttttcatctcactcga |
259 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
55310484 |
atggtttctggccctggccgccaaggatcgttttcatctccctcga |
55310529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University