View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6217_low_9 (Length: 258)
Name: NF6217_low_9
Description: NF6217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6217_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 47706895 - 47706977
Alignment:
| Q |
154 |
cctgcaagttcttgcttcttcaacaaaaagagaaaacctctctttccattttttaaacttttattaacagctatacatgatac |
236 |
Q |
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| T |
47706895 |
cctgcaagttcttgcttcttcaacaaaaagagaaaacctctctttccatttttgaaagttttattaacagctatacatgatac |
47706977 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 47706758 - 47706838
Alignment:
| Q |
17 |
caacacttaaaccagacaaaaaactttcagaatttctaaaagacaaacaagaacctttcatcctacaactttacttattag |
97 |
Q |
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| T |
47706758 |
caacacttaaaccagagaaaaaactttcagaatttctaaaagacaaacaagaacctttcatcctagaactttacttattag |
47706838 |
T |
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