View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6218_high_10 (Length: 226)
Name: NF6218_high_10
Description: NF6218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6218_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 12001941 - 12002131
Alignment:
| Q |
17 |
aggcaacagaaatcattgatgactttaacaatgttattgtggatgtgtctgacagtgatgatgacacaaaaggaaagaaaatgcataggtcagcaatgaa |
116 |
Q |
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| T |
12001941 |
aggcaacaaaaatcattgatgactttaacaatgttattgtggatgtgtctgacggtgatgatgacacaaaaggaaagaaagtgcataggtcagtgatgaa |
12002040 |
T |
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| Q |
117 |
tggaatgtataacaacactatgtttgaaatgaaaccacctctcccaaaagagtggaccacaggtgaaaaatcaggtgttaaggacaacact |
207 |
Q |
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| T |
12002041 |
tggaatgtataataacactatatttggaatgaaaccacctctcctaaaagagtggaccacaggtgaaaaatcaggtgttaaggacaacact |
12002131 |
T |
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Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 17813854 - 17813693
Alignment:
| Q |
20 |
caacagaaatcattgatgactttaacaatgttattgtggatgtgtctgacagtgatgatgacacaaaaggaaagaaaatgcataggtcagcaatgaatgg |
119 |
Q |
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| T |
17813854 |
caacataaatctttgatgaccttaacaatgttattgtggatgtgtctgacaatgataatgacacaaaagaaaagaaagtgcataggtcagtgttgaatgg |
17813755 |
T |
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| Q |
120 |
aatgtataacaacactatgtttgaaatgaaaccacctctcccaaaagagtggaccacaggtg |
181 |
Q |
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| T |
17813754 |
aatgtatggcaacattatatttggaatgaaaccaactctcctaaaagagtggaacacaggtg |
17813693 |
T |
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