View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6218_low_2 (Length: 575)
Name: NF6218_low_2
Description: NF6218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6218_low_2 |
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| [»] scaffold0024 (5 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 250; Significance: 1e-138; HSPs: 5)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 76 - 547
Target Start/End: Complemental strand, 30878 - 30427
Alignment:
| Q |
76 |
ccgaaaatttcacagaatgaaaattgctactaatctataatatcaataattcaatatataaaggggatatcaagatttggtgtgacttttatttaagatt |
175 |
Q |
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| T |
30878 |
ccgaaaaattcacagaatgaaaactgctactaatctataatatcaata--------tataaagggaatatcaaattttggtg--acttttatttcagatt |
30789 |
T |
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| Q |
176 |
aaacaaaaccaataatgcaacagaatgaaaattgagatggtgagcaaactacttacagaaaatatgcgcccatctcgggataatgcaacagaatgagtac |
275 |
Q |
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| T |
30788 |
aaacaaaac-----atggcaaagaa----aattgagatggtgagcaaactacttacagaaaatatgcgcccatctcgggttaatgcaacagaatgagtac |
30698 |
T |
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| Q |
276 |
ctccacaggacacctgaccacaaaccaataaatagatatttcagcataaactagtcataactattattagtagaaaaacactaatgactattttacagcc |
375 |
Q |
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| T |
30697 |
ctccacaagacacctgaccacaaaccaataaatagatatttcagcat-aactagtcataactattattagtaaaaaaacactaatgactattttacaatc |
30599 |
T |
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| Q |
376 |
gaccctgagagaactttgtcgttaaactcttatcac--taagctaacacctttatggcgttatgtaattcaatggaagctaattagagatgataagataa |
473 |
Q |
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| T |
30598 |
gaccctgagagaactttatctcttga-ggttatgacgttaagctaacacc-ttatggcattatgtaattcaatggaagctaattagagatgataagataa |
30501 |
T |
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| Q |
474 |
gaaaaaattacataattagaaagcgctatttgtgaaggcgaaaccatttccactatcaaagtgactattgtttc |
547 |
Q |
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| T |
30500 |
gaaaaaagtacataattagaaagcgctatttgtgaaggtgaaatcatttccactatgaaagtgactgttgtttc |
30427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 76 - 240
Target Start/End: Complemental strand, 65862 - 65702
Alignment:
| Q |
76 |
ccgaaaatttcacagaatgaaaattgctactaatctataatatcaataattcaatatataaaggggatatcaagatttggtgtgacttttatttaagatt |
175 |
Q |
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| T |
65862 |
ccgaaaatttcacagaatgaaaattgctactaatctataatatcaataattcaatatataaaggggatatcaagatttggtgtgacttttatttaagatt |
65763 |
T |
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| Q |
176 |
aaacaaaaccaataatgcaacagaatgaaaattgagatggtgagcaaactacttacagaaaatat |
240 |
Q |
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| T |
65762 |
aaacaaaaccaataatgcaacagaatgaaaattgagatggt----aaactacttacagaaaatat |
65702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 500 - 569
Target Start/End: Complemental strand, 65704 - 65635
Alignment:
| Q |
500 |
tatttgtgaaggcgaaaccatttccactatcaaagtgactattgtttcataaccatgatacctatgctac |
569 |
Q |
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| T |
65704 |
tatttgtgaaggcgaaaccatttccactatcaaagtgactattgtttcataaccatgatacctatgctac |
65635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 31052 - 30991
Alignment:
| Q |
16 |
attctgtggaggagggatgtctacaggtacctccattggttgaccagtagtgactttcctcc |
77 |
Q |
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| T |
31052 |
attctgtggaggagggatgtctataggtacctccattggttgaccagtagtgactttcctcc |
30991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 66038 - 65975
Alignment:
| Q |
16 |
attctgtggaggagggatgtctaca--ggtacctccattggttgaccagtagtgactttcctcc |
77 |
Q |
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| T |
66038 |
attctgtggaggagggatgtctatataggtacctccattggttgaccagtagtgactttcctcc |
65975 |
T |
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