View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6218_low_3 (Length: 518)
Name: NF6218_low_3
Description: NF6218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6218_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 515
Target Start/End: Complemental strand, 48870824 - 48870312
Alignment:
| Q |
19 |
ttgtgatcttatgttgttttttggatttcaaagattgaattgcatagaaattgttggattcattagatgcgggatgtaatgcaactcttttccaacaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48870824 |
ttgtgatcttatgttgttttttggatttcaaagattgaattgcatagaaattgttggattcattagatgcgggatgtaatgcaactcttttccaacgatt |
48870725 |
T |
|
| Q |
119 |
agatttattatttttaaagtaacatttcatagattttatgttgtggttgtatctgcaatgtatcattttttctctttcaaaatgatattgattttagtta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48870724 |
agatttattatttttaaagtaacatttcatagattttatgttgtggttgtatctgcaatgtatcattttttctctttcaaaatgatattgattttagtta |
48870625 |
T |
|
| Q |
219 |
tgattatctgttttagtaaccactgctcaaagtgcacgaacggcattgaactt---gttgagagaaaacaaaaacaattttgacctagtaatcagtaatg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48870624 |
tgattatctgttttagtaaccactgctcaaagtgcacgaacggcattgaacttgttgttgagagaaaacaaaaacaattttgacctagtaatcagtaatg |
48870525 |
T |
|
| Q |
316 |
ttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataggtaagttatgcaattctccaatcttatg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48870524 |
ttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataggtaagttatgcaattctccaatcttatg |
48870425 |
T |
|
| Q |
416 |
ttactgatacatttataaaaaattatagtg-------------ttttgatttcagtgttttctgcaaatgatgatccaaggatggtgatgaaaggaattg |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48870424 |
ttactgatacatttataaaaaattatagtgttttgattacagtttttgatttcagtgttttctgcaaatgatgatccaaggatggtgatgaaaggaattg |
48870325 |
T |
|
| Q |
503 |
atcatggtgcttg |
515 |
Q |
| |
|
||||||||||||| |
|
|
| T |
48870324 |
atcatggtgcttg |
48870312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 233 - 515
Target Start/End: Original strand, 2904575 - 2904874
Alignment:
| Q |
233 |
agtaaccactgctcaaagtgcacgaacggcattgaacttgttgagagaaaacaaaaacaattttgacctagtaatcagtaatgttcatatgccagacatg |
332 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2904575 |
agtaaccactgctcaaagtgcactaacagcattgaacttgttgagagaaaacaaaagcaattttgacctagtaatcagcaatgttcatatgccagacatg |
2904674 |
T |
|
| Q |
333 |
gatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataggtaagttatgcaattctccaatcttatgttactgatacatttata |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| |||| ||| ||| |
|
|
| T |
2904675 |
gatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatcagtaagttatgaaattcttcaatcttatgttattgatccatgcata |
2904774 |
T |
|
| Q |
433 |
aaaaatta--tagtgt---------------tttgatttcagtgttttctgcaaatgatgatccaaggatggtgatgaaaggaattgatcatggtgcttg |
515 |
Q |
| |
|
||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2904775 |
gaaaattatttagggttttgattaaaaaatgtttgatttcagtgttttctgcaaatgatgatccaaagatggtgatgaaaggaattgatcatggtgcttg |
2904874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 233 - 515
Target Start/End: Original strand, 2888472 - 2888777
Alignment:
| Q |
233 |
agtaaccactgctcaaagtgcacgaacggcattgaacttgttgagagaaaacaaaaacaattttgacctagtaatcagtaatgttcatatgccagacatg |
332 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2888472 |
agtaaccactgctcatagtgcactaacagcactgaacttattgagagaaaacaaaagcaattttgacctagtaatcagcaatgttcatatgccagacatg |
2888571 |
T |
|
| Q |
333 |
gatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataggtaagttatgcaattctccaatctta------tgttactgataca |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| |||| || |
|
|
| T |
2888572 |
gatggatttaagcttcttgagcttgttggacttgagatggatttacctgtcataagtaagttatgcaattcttcaatcttattctattgttattgatcca |
2888671 |
T |
|
| Q |
427 |
tttataaaaaatta--tagtgt---------------tttgatttcagtgttttctgcaaatgatgatccaaggatggtgatgaaaggaattgatcatgg |
509 |
Q |
| |
|
| ||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
2888672 |
tgcataaaaaattatttagggttttgatcaaaaaatgtttgatttcagtgttttctgcaaatgatgatccaaagatggtgatgaaaggaattgaacatgg |
2888771 |
T |
|
| Q |
510 |
tgcttg |
515 |
Q |
| |
|
|||||| |
|
|
| T |
2888772 |
tgcttg |
2888777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 227 - 515
Target Start/End: Original strand, 2893061 - 2893365
Alignment:
| Q |
227 |
tgttttagtaaccactgctcaaagtgcacgaacggcattgaacttgttgagagaaaacaaaaacaattttgacctagtaatcagtaatgttcatatgcca |
326 |
Q |
| |
|
||||| ||||||||||||||||| || |||||| |||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2893061 |
tgtttcagtaaccactgctcaaaacgcgataacggcgttgaacctgttgagagaaaacaaaagcaattttgacctagtaatcagcaatgttcatatgcca |
2893160 |
T |
|
| Q |
327 |
gacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataggtaagttatgcaatt-ctccaatcttatgttactgatac |
425 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | | ||||| | | ||||| |
|
|
| T |
2893161 |
gacatggacggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatcagtaagttatgcaattccttcgaccttatatcatcgatac |
2893260 |
T |
|
| Q |
426 |
atttataaaaaattatagtgt---------------tttgatttcagtgttttctgcaaatgatgatccaaggatggtgatgaaaggaattgatcatggt |
510 |
Q |
| |
|
|| ||||| ||||||||| | ||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| || ||| |
|
|
| T |
2893261 |
atgtataaggaattatagtattttgattataaagtgtttgatttcagtgttttctgcgaatgatgatccgaagatggtgatgaaaggaattgaacacggt |
2893360 |
T |
|
| Q |
511 |
gcttg |
515 |
Q |
| |
|
||||| |
|
|
| T |
2893361 |
gcttg |
2893365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 2904385 - 2904539
Alignment:
| Q |
19 |
ttgtgatcttatgttgttttttggatttcaaagattgaattgcatagaaattgttggattcattagatgcgggatgtaatgcaactcttttccaacaatt |
118 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| |||||| | ||| |||||| ||| |||||| ||| |
|
|
| T |
2904385 |
ttgtgatcttatattattttttggatttcaaagatttaattgcatccaaattgttggattca-cagatgcagattgtcatgcaattctattccaatgatt |
2904483 |
T |
|
| Q |
119 |
agatttatta-tttttaaagtaacatttcatagattttatgttgtggttgtatctg |
173 |
Q |
| |
|
|||||| ||| ||||| || |||||| |||||||||||||| |||||||||||||| |
|
|
| T |
2904484 |
agatttcttatttttttaattaacatatcatagattttatgatgtggttgtatctg |
2904539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 2888276 - 2888387
Alignment:
| Q |
19 |
ttgtgatcttatgttgtttt-ttggatttcaaagattgaattgcatagaaattgttggattcattagatgcgggatgtaatgcaactcttttccaacaat |
117 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| |||| ||| ||||||||||||||| ||||||| | ||| |||||| |||| |||| || |
|
|
| T |
2888276 |
ttgtgatcttatgttatttttttggatttcaaagatttaatttcatcaaaattgttggattcactagatgcagattgtcatgcaattcttccccaatgat |
2888375 |
T |
|
| Q |
118 |
tagatttattat |
129 |
Q |
| |
|
||||||| |||| |
|
|
| T |
2888376 |
tagatttcttat |
2888387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 257 - 393
Target Start/End: Complemental strand, 49061301 - 49061165
Alignment:
| Q |
257 |
aacggcattgaacttgttgagagaaaacaaaaacaattttgacctagtaatcagtaatgttcatatgccagacatggatggatttaagcttcttgagctt |
356 |
Q |
| |
|
|||||| |||| | ||||||||||||||||| |||| |||||||| ||||||||| |||| || ||||| |||||||||||||||||||| ||||| ||| |
|
|
| T |
49061301 |
aacggcgttgaccatgttgagagaaaacaaagacaagtttgacctggtaatcagtgatgtacacatgccggacatggatggatttaagctgcttgaactt |
49061202 |
T |
|
| Q |
357 |
gttggacttgagatggacctacctgtcataggtaagt |
393 |
Q |
| |
|
|| |||||||| |||||||| || |||||| |||||| |
|
|
| T |
49061201 |
gtgggacttgaaatggaccttcccgtcataagtaagt |
49061165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 376
Target Start/End: Complemental strand, 47275497 - 47275378
Alignment:
| Q |
257 |
aacggcattgaacttgttgagagaaaacaaaaacaattttgacctagtaatcagtaatgttcatatgccagacatggatggatttaagcttcttgagctt |
356 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||| |||||||| |||||| | |||| || |||| |||||||||||| ||||||| ||||| ||| |
|
|
| T |
47275497 |
aacggcattgactatgttgcgagaaaacaaagacaagtttgacctggtaatcgctgatgtgcacctgcctgacatggatggacttaagctgcttgaactt |
47275398 |
T |
|
| Q |
357 |
gttggacttgagatggacct |
376 |
Q |
| |
|
|| | |||||||| |||||| |
|
|
| T |
47275397 |
gtggaacttgagacggacct |
47275378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 38953391 - 38953327
Alignment:
| Q |
321 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcat |
385 |
Q |
| |
|
||||| |||||||| || || || |||||||||| |||||||||||||||||| || |||||||| |
|
|
| T |
38953391 |
atgcctgacatggacggtttcaaacttcttgagcatgttggacttgagatggatcttcctgtcat |
38953327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 394
Target Start/End: Complemental strand, 47281138 - 47281038
Alignment:
| Q |
294 |
tttgacctagtaatcagtaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataggtaagt |
393 |
Q |
| |
|
|||||||| |||||| | | ||||| ||||| |||||||||||| | ||||| || || ||||| |||||||| ||||| || ||||||||| |||||| |
|
|
| T |
47281138 |
tttgacctggtaatcgctgaagttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagt |
47281039 |
T |
|
| Q |
394 |
t |
394 |
Q |
| |
|
| |
|
|
| T |
47281038 |
t |
47281038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 501
Target Start/End: Complemental strand, 49061046 - 49060992
Alignment:
| Q |
447 |
tttgatttcagtgttttctgcaaatgatgatccaaggatggtgatgaaaggaatt |
501 |
Q |
| |
|
||||||||||||||| |||||| ||| |||| ||| | ||||||||||||||||| |
|
|
| T |
49061046 |
tttgatttcagtgttgtctgcatatggtgatacaaagctggtgatgaaaggaatt |
49060992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 271 - 394
Target Start/End: Original strand, 22085215 - 22085338
Alignment:
| Q |
271 |
tgttgagagaaaacaaaaacaattttgacctagtaatcagtaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagat |
370 |
Q |
| |
|
||||||| ||||||| ||| || |||||||| || |||||| |||| |||||| |||||||||||||||||| | |||||| | || |||||||| || |
|
|
| T |
22085215 |
tgttgagggaaaacagaaagaactttgacctggttatcagtgatgtggctatgcccgacatggatggatttaagttgcttgagttggtaggacttgaaat |
22085314 |
T |
|
| Q |
371 |
ggacctacctgtcataggtaagtt |
394 |
Q |
| |
|
|||| |||||||||| ||||||| |
|
|
| T |
22085315 |
ggacttacctgtcatcagtaagtt |
22085338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 54905559 - 54905480
Alignment:
| Q |
294 |
tttgacctagtaatcagtaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatgga |
373 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||||||||||||| || ||||| ||||||| ||||||||||| ||||| |
|
|
| T |
54905559 |
tttgacctagtaattagtgatgttagcatgccagacatggatggcttcaagctccttgagcaagttggacttgaaatgga |
54905480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 54895106 - 54895042
Alignment:
| Q |
321 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcat |
385 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||||| |||||||||||||||||||| ||| |||| |
|
|
| T |
54895106 |
atgccagaaatggatggtttcaagctccttgagcaagttggacttgagatggacctgcctttcat |
54895042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 379
Target Start/End: Complemental strand, 54889483 - 54889425
Alignment:
| Q |
321 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacc |
379 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||| ||||||||||| || |||||||| |
|
|
| T |
54889483 |
atgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacc |
54889425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 50106737 - 50106774
Alignment:
| Q |
306 |
atcagtaatgttcatatgccagacatggatggatttaa |
343 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
50106737 |
atcagtgatgtgcatatgccagacatggatggatttaa |
50106774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 385
Target Start/End: Original strand, 34316049 - 34316113
Alignment:
| Q |
321 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcat |
385 |
Q |
| |
|
||||| ||||||||||| || || |||||||| | |||||||||||||||||| || |||||||| |
|
|
| T |
34316049 |
atgcctgacatggatggtttcaaacttcttgaacatgttggacttgagatggatcttcctgtcat |
34316113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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