View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6218_low_4 (Length: 489)
Name: NF6218_low_4
Description: NF6218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6218_low_4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 37704492 - 37704966
Alignment:
| Q |
1 |
gtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704492 |
gtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaag |
37704591 |
T |
|
| Q |
101 |
tttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagataac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37704592 |
tttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagataac |
37704691 |
T |
|
| Q |
201 |
aaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704692 |
aaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagact |
37704791 |
T |
|
| Q |
301 |
tcttcaaatgtacatactttaaagagcaaattacgatacttttaagttatttaattataacaaatcggnnnnnnnnnnnnnnnncgtatcacttacgtca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
37704792 |
tcttcaaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataacaaatcggttttttaagattttttcgtatcacttgcgtca |
37704891 |
T |
|
| Q |
401 |
tttaagttatttaattataacaagttagttatgtagttgctcaaaaaacaagttagttatgtaagtatttttcgt |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37704892 |
tttaagttatttaattataacaagttagttatgtagttgctcaaaaaacaagttagttatgtaagtatttttcgt |
37704966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 37699013 - 37699349
Alignment:
| Q |
1 |
gtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaag |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
37699013 |
gtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgacatttggcaacaatattaattcagtaacaatcatagaaaag |
37699112 |
T |
|
| Q |
101 |
tttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---ataaga |
196 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| ||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||||| |||||| |
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|
| T |
37699113 |
tttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagcactaaagttggaatcttattgcaagttgtgataataaga |
37699212 |
T |
|
| Q |
197 |
taacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaat------aacattaattgtatttagaatcgga |
290 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| | |||| |
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|
| T |
37699213 |
taacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatgaagaaaataataacaacattaattgtatttagcaacgga |
37699312 |
T |
|
| Q |
291 |
gacttagacttcttcaaatgtacatactttaaagagc |
327 |
Q |
| |
|
||||||||||||||||| || ||| |||||||||||| |
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|
| T |
37699313 |
gacttagacttcttcaactgaacagactttaaagagc |
37699349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 28 - 267
Target Start/End: Original strand, 37437584 - 37437823
Alignment:
| Q |
28 |
ggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatat |
127 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |
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|
| T |
37437584 |
ggggtgcttttcataaccgtatagtgatatgacaattggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacat |
37437683 |
T |
|
| Q |
128 |
cttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatcac |
223 |
Q |
| |
|
|| ||||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
37437684 |
attggaagaccaagacttttcgaacgtaattagc----aagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcag |
37437779 |
T |
|
| Q |
224 |
agtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataa |
267 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
37437780 |
aatgagtaatttgcttaaaaatacacctgaaatgaagaaaataa |
37437823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 37698732 - 37698864
Alignment:
| Q |
84 |
taaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta----gcacgaaagttggaatctta |
178 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||| |||| ||||||||||||||| |
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|
| T |
37698732 |
taacaatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaattagcactaaagttggaatctta |
37698831 |
T |
|
| Q |
179 |
tttcaagttgtgataagataacaaattcattta |
211 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
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|
| T |
37698832 |
ttgcaagttgtgataagataacaaattcattta |
37698864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 30384256 - 30384298
Alignment:
| Q |
385 |
cgtatcacttacgtcatttaagttatttaattataacaagtta |
427 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| |||||||||| |
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|
| T |
30384256 |
cgtattacttacgtcttttaagttatttaattgtaacaagtta |
30384298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 422
Target Start/End: Complemental strand, 1630048 - 1630012
Alignment:
| Q |
386 |
gtatcacttacgtcatttaagttatttaattataaca |
422 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
1630048 |
gtatcacttacgtcttttaagttatttaatcataaca |
1630012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 91 - 327
Target Start/End: Complemental strand, 16841109 - 16840857
Alignment:
| Q |
91 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
189 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
|
| Q |
190 |
g------ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaa |
273 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||| ||| |||| ||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
16841010 |
gatattaataagataacaaattcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaa |
16840911 |
T |
|
| Q |
274 |
ttgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc |
327 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| | | ||||||||||||||| |
|
|
| T |
16840910 |
atgtatttagaagcggagacttagacttcgtcaactatccatactttaaagagc |
16840857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 31095092 - 31095132
Alignment:
| Q |
387 |
tatcacttacgtcatttaagttatttaattataacaagtta |
427 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31095092 |
tatcacttacgtcctttaagttatttaattataacaagtta |
31095132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 17411089 - 17411131
Alignment:
| Q |
387 |
tatcacttacgtcatttaagttatttaattataacaagttagt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17411089 |
tatcacttacgtcatttaagttatttaattgtaacaagttagt |
17411131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 196287 - 196244
Alignment:
| Q |
386 |
gtatcacttacgtcatttaagttatttaattataacaagttagt |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
196287 |
gtatcacttacgtcatttaagttatttaattgtaataatttagt |
196244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 18080600 - 18080645
Alignment:
| Q |
387 |
tatcacttacgtcatttaagttatttaattataacaagttagttat |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
18080600 |
tatcacttacgtcatttaagttatttaattgtaataagttagttat |
18080645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 44291463 - 44291420
Alignment:
| Q |
386 |
gtatcacttacgtcatttaagttatttaattataacaagttagt |
429 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
44291463 |
gtatcacttatgtcctttaagttatttaattgtaacaagttagt |
44291420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 424
Target Start/End: Complemental strand, 12422390 - 12422352
Alignment:
| Q |
386 |
gtatcacttacgtcatttaagttatttaattataacaag |
424 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
12422390 |
gtatcacttacgtcttttaagttatttaattttaacaag |
12422352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 429
Target Start/End: Original strand, 32857805 - 32857837
Alignment:
| Q |
397 |
gtcatttaagttatttaattataacaagttagt |
429 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
32857805 |
gtcatttaagttatttaattgtaacaagttagt |
32857837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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