View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6218_low_5 (Length: 460)
Name: NF6218_low_5
Description: NF6218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6218_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 444
Target Start/End: Original strand, 25994324 - 25994757
Alignment:
| Q |
9 |
gaagaatatgataagaaagtcaaacatgaggctagtttggctatagaagatcttgttcctcgtgagaaaacaaagaaggctttgttagcacgtggttttg |
108 |
Q |
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| T |
25994324 |
gaagaaaatgataagaaagttaaacatgaggctagtttggctattgaagatcttgttcctcgtgagaaaacaaagaaggctttgttagcacgtggttttg |
25994423 |
T |
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| Q |
109 |
acatgcttggttactcactcaactcgcttaggttaacgaatatgaaattttgtgacaccaaagcaacgaggttttcacaagtggtaaggttgcaacttaa |
208 |
Q |
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| T |
25994424 |
acatgcttggttactcactcaactcacttaggttaacgaatatgaaattttgtgacaccaaagcaacgaggttttcacaagtggtaaggttgcaacttaa |
25994523 |
T |
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| Q |
209 |
tcaagatgacactaagggggttctagctgtaagctccttaattaccatttctatatatattgagtgtaatgttcatgtaattactaaattaatgatatac |
308 |
Q |
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| T |
25994524 |
tcaagatgacactaagggggttctagctgtaagctccttaattaccatttc--tatatattgagtgtaatgttcatgtaattactaaattaatgatatac |
25994621 |
T |
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| Q |
309 |
tcccctatcttaatactatgatgattgaattttaactgttagggttgcgcttttaatgggataaaagtgtgtggggtattgagtgctgcggggttgatgg |
408 |
Q |
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| T |
25994622 |
tccgctatcttaatactatgatgattgaattttaattgttagggttgcgctttgaatgggataaaagtgtgtggggtattgagtgctgcggggttgatgg |
25994721 |
T |
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| Q |
409 |
ctgcccatggctcaaaacgtggttccaagaagtatg |
444 |
Q |
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| T |
25994722 |
ctgcccatggctcaaaacgtggttccaagaagtatg |
25994757 |
T |
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