View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6218_low_9 (Length: 287)
Name: NF6218_low_9
Description: NF6218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6218_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 43468321 - 43468587
Alignment:
| Q |
1 |
agacattcttaaagaagggttaacctaggttctgaagacaaatgtatgtattcattattttatggtaagaaaatcaatcaattatgagaaaatatattca |
100 |
Q |
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| T |
43468321 |
agacattcttaaagaagggttaacctaggttctgaagacaaatgtatgtattcattattttatggtaagaaaaccaatcgattatgagaaaatatattca |
43468420 |
T |
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| Q |
101 |
acaaaatggatatatagcttactgttacacattccagaagtcttttatattaacgaccaatcaaaaaagtatatatatgtgcgtgtgcctatctgcgtgg |
200 |
Q |
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| T |
43468421 |
acaaaatagatatatagcttactgttacacattccagaagtcttctatattaacgaccaatcaaaaaataatgtttgtttctatgag-ctatctgtgtgg |
43468519 |
T |
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| Q |
201 |
atatgtatgtaaactgaatatttaggtctgataaaagattgatacatgtttgtttctatgagcataat |
268 |
Q |
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| T |
43468520 |
atatgtatgtaaactgaatatttaggtctcataaaagactgatacatgtttgtttctatgagcataat |
43468587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43477388 - 43477430
Alignment:
| Q |
1 |
agacattcttaaagaagggttaacctaggttctgaagacaaat |
43 |
Q |
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| T |
43477388 |
agacattcttaacgaagggttaacctagattctgaagacaaat |
43477430 |
T |
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