View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6219_high_1 (Length: 359)
Name: NF6219_high_1
Description: NF6219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6219_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 34768133 - 34768470
Alignment:
| Q |
1 |
gatgaaacccaatccaaaccaactttaatcgtatttagttattgactacaggaatttatttaaaataatttatttatttgtaattattctcatatttaac |
100 |
Q |
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| T |
34768133 |
gatgaaacccagtccaaaccaactttaatcgtatttagttattgactacaggaatttatttaaaataatttatttatttgttattattctcatatttaac |
34768232 |
T |
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| Q |
101 |
ctagcccagttttatgacatgtttctttatttctaaatttgtcttctttatataacttttttacgcaatatcagagttttactatatttattgactcagt |
200 |
Q |
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| T |
34768233 |
ctagcccagttttatgacatgtttctttatttctaaatttgtcttctttatacaacttttttacgcaatatcaaagttttactatatttattgactcagt |
34768332 |
T |
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| Q |
201 |
gaaaatttcaatatatgttgaatacttagcttactcgagaatatatattgagtccaagttaaagatatggacattgttttccactaaaaaatgctataga |
300 |
Q |
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| T |
34768333 |
gaaaatttcaatatatgttgaatacttagcttactcgagaatatatattgagtccaagttaaagatatggacattgtttcccactaaaaaatgctataga |
34768432 |
T |
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| Q |
301 |
tgatgagacaagagcacttgaaaaaagaatgaaacttg |
338 |
Q |
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| T |
34768433 |
tgatgagacaagagcacttgaaaaaagaatggaacttg |
34768470 |
T |
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