View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6220_low_1 (Length: 515)

Name: NF6220_low_1
Description: NF6220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6220_low_1
NF6220_low_1
[»] chr8 (29 HSPs)
chr8 (15-496)||(10678141-10678604)
chr8 (15-126)||(35181516-35181627)
chr8 (15-126)||(34304788-34304899)
chr8 (15-126)||(16603615-16603726)
chr8 (15-126)||(18066707-18066818)
chr8 (15-125)||(16358822-16358933)
chr8 (15-124)||(33629982-33630091)
chr8 (27-126)||(1375542-1375641)
chr8 (32-124)||(20148762-20148854)
chr8 (27-126)||(5754903-5755002)
chr8 (27-126)||(11582766-11582865)
chr8 (27-126)||(29705362-29705461)
chr8 (27-126)||(36743484-36743583)
chr8 (27-124)||(29800951-29801048)
chr8 (27-124)||(42295197-42295294)
chr8 (15-126)||(19386554-19386670)
chr8 (27-126)||(40528635-40528735)
chr8 (27-124)||(26125637-26125734)
chr8 (32-124)||(42699259-42699351)
chr8 (27-126)||(30660743-30660842)
chr8 (27-118)||(31384672-31384763)
chr8 (27-126)||(42197436-42197535)
chr8 (39-124)||(30912575-30912660)
chr8 (27-126)||(2165964-2166063)
chr8 (27-126)||(2546996-2547095)
chr8 (38-125)||(45397317-45397404)
chr8 (27-124)||(3743773-3743870)
chr8 (27-84)||(9241594-9241651)
chr8 (234-271)||(43892398-43892435)
[»] chr1 (24 HSPs)
chr1 (15-126)||(35003294-35003405)
chr1 (15-126)||(48119628-48119739)
chr1 (15-126)||(44112677-44112788)
chr1 (15-126)||(38113184-38113295)
chr1 (15-126)||(38335918-38336029)
chr1 (15-126)||(45639721-45639832)
chr1 (15-126)||(46168383-46168494)
chr1 (15-126)||(45427734-45427845)
chr1 (17-126)||(41065153-41065262)
chr1 (15-126)||(45705825-45705936)
chr1 (15-126)||(35000102-35000213)
chr1 (15-126)||(26585462-26585573)
chr1 (27-126)||(37814778-37814877)
chr1 (27-126)||(43571087-43571186)
chr1 (32-124)||(2497568-2497660)
chr1 (27-126)||(5489776-5489875)
chr1 (27-126)||(23989524-23989624)
chr1 (79-126)||(14427347-14427394)
chr1 (27-126)||(48498963-48499062)
chr1 (27-126)||(750306-750405)
chr1 (27-126)||(24769500-24769599)
chr1 (27-124)||(7447828-7447924)
chr1 (27-124)||(4401329-4401427)
chr1 (38-126)||(50448272-50448360)
[»] chr3 (25 HSPs)
chr3 (15-126)||(25996268-25996379)
chr3 (15-126)||(9434124-9434235)
chr3 (15-126)||(10457881-10457992)
chr3 (18-126)||(4190257-4190365)
chr3 (16-126)||(51757593-51757703)
chr3 (15-126)||(34791829-34791940)
chr3 (15-126)||(52627966-52628077)
chr3 (32-126)||(45126934-45127028)
chr3 (38-126)||(42100688-42100776)
chr3 (27-126)||(40808865-40808964)
chr3 (27-126)||(46941053-46941152)
chr3 (27-125)||(54237097-54237195)
chr3 (27-126)||(24688403-24688502)
chr3 (27-126)||(25413681-25413780)
chr3 (27-126)||(36150130-36150229)
chr3 (27-126)||(54246149-54246248)
chr3 (27-125)||(40480750-40480848)
chr3 (27-125)||(42394420-42394518)
chr3 (27-124)||(27748565-27748662)
chr3 (27-124)||(53581859-53581956)
chr3 (26-126)||(53273684-53273784)
chr3 (27-126)||(47191027-47191125)
chr3 (41-122)||(29558249-29558330)
chr3 (27-111)||(51249323-51249407)
chr3 (27-84)||(52629870-52629927)
[»] chr6 (18 HSPs)
chr6 (15-126)||(33242403-33242514)
chr6 (15-124)||(27441544-27441653)
chr6 (15-126)||(33253913-33254025)
chr6 (27-126)||(3213400-3213499)
chr6 (27-126)||(13743222-13743321)
chr6 (27-126)||(13748722-13748821)
chr6 (32-124)||(24203993-24204085)
chr6 (27-126)||(7273336-7273435)
chr6 (27-126)||(9698334-9698433)
chr6 (27-126)||(26670010-26670109)
chr6 (15-126)||(31109211-31109322)
chr6 (27-126)||(21293678-21293777)
chr6 (27-126)||(26466799-26466898)
chr6 (27-126)||(30014343-30014442)
chr6 (27-126)||(7292747-7292846)
chr6 (27-126)||(21279929-21280028)
chr6 (32-126)||(7367549-7367643)
chr6 (27-124)||(30735984-30736081)
[»] chr4 (38 HSPs)
chr4 (15-126)||(17619141-17619252)
chr4 (15-126)||(32728357-32728468)
chr4 (15-126)||(55272365-55272476)
chr4 (16-126)||(711960-712070)
chr4 (18-126)||(960862-960970)
chr4 (15-126)||(48435568-48435679)
chr4 (15-124)||(35037007-35037116)
chr4 (21-124)||(3756242-3756344)
chr4 (19-126)||(46827699-46827806)
chr4 (15-124)||(38851515-38851624)
chr4 (18-93)||(19879987-19880062)
chr4 (39-126)||(28982835-28982922)
chr4 (27-126)||(28988473-28988572)
chr4 (15-84)||(36004105-36004174)
chr4 (27-126)||(23035980-23036079)
chr4 (27-126)||(33703141-33703240)
chr4 (32-126)||(27864564-27864658)
chr4 (27-124)||(27893843-27893940)
chr4 (38-126)||(1771278-1771366)
chr4 (38-126)||(55966358-55966446)
chr4 (46-126)||(49229684-49229764)
chr4 (27-126)||(25051693-25051792)
chr4 (27-126)||(27316714-27316813)
chr4 (27-126)||(27550309-27550408)
chr4 (27-125)||(41878407-41878505)
chr4 (32-126)||(48463456-48463550)
chr4 (27-124)||(31680904-31681001)
chr4 (27-124)||(41327544-41327641)
chr4 (27-126)||(35017733-35017831)
chr4 (27-126)||(41847971-41848070)
chr4 (27-126)||(45490314-45490413)
chr4 (38-124)||(43514698-43514784)
chr4 (27-124)||(43949802-43949900)
chr4 (27-126)||(12496956-12497055)
chr4 (27-124)||(39631102-39631200)
chr4 (27-123)||(23204779-23204875)
chr4 (90-126)||(36004168-36004204)
chr4 (152-246)||(47209992-47210086)
[»] chr2 (31 HSPs)
chr2 (15-126)||(43114557-43114668)
chr2 (15-124)||(11825643-11825752)
chr2 (15-124)||(41281963-41282072)
chr2 (18-126)||(18491705-18491813)
chr2 (19-126)||(966827-966934)
chr2 (15-126)||(12415449-12415560)
chr2 (15-126)||(12427509-12427620)
chr2 (20-126)||(16803968-16804074)
chr2 (20-126)||(16843250-16843356)
chr2 (15-124)||(4299409-4299518)
chr2 (15-126)||(14285676-14285787)
chr2 (15-126)||(34895730-34895841)
chr2 (27-125)||(34817777-34817875)
chr2 (15-108)||(12531652-12531744)
chr2 (27-126)||(1750414-1750513)
chr2 (15-102)||(4451939-4452026)
chr2 (27-126)||(4764727-4764826)
chr2 (41-124)||(6518484-6518566)
chr2 (27-126)||(30838632-30838731)
chr2 (27-126)||(12302254-12302353)
chr2 (27-126)||(13780736-13780835)
chr2 (27-126)||(16096747-16096846)
chr2 (27-125)||(19047158-19047256)
chr2 (27-124)||(43490402-43490499)
chr2 (38-124)||(7070418-7070504)
chr2 (30-124)||(8896587-8896681)
chr2 (27-126)||(43335764-43335863)
chr2 (47-124)||(33229303-33229381)
chr2 (30-126)||(42026767-42026865)
chr2 (32-84)||(42849864-42849916)
chr2 (90-126)||(42849910-42849946)
[»] scaffold0003 (1 HSPs)
scaffold0003 (15-124)||(45708-45817)
[»] chr7 (29 HSPs)
chr7 (15-126)||(31513287-31513398)
chr7 (15-126)||(40236919-40237030)
chr7 (15-125)||(31408622-31408732)
chr7 (15-126)||(27535220-27535331)
chr7 (15-126)||(33384870-33384982)
chr7 (27-124)||(4638200-4638297)
chr7 (27-124)||(10573751-10573848)
chr7 (32-124)||(44326180-44326272)
chr7 (27-126)||(5810925-5811024)
chr7 (27-126)||(24001013-24001112)
chr7 (27-126)||(42538432-42538531)
chr7 (27-126)||(5194232-5194331)
chr7 (27-126)||(35069721-35069820)
chr7 (27-124)||(43343625-43343722)
chr7 (27-124)||(44416935-44417032)
chr7 (27-126)||(5015395-5015494)
chr7 (27-126)||(24280597-24280696)
chr7 (32-123)||(26898408-26898499)
chr7 (27-126)||(45326020-45326119)
chr7 (27-126)||(41861674-41861775)
chr7 (38-126)||(42972852-42972940)
chr7 (206-306)||(25663952-25664052)
chr7 (59-126)||(39998408-39998475)
chr7 (27-117)||(32029818-32029908)
chr7 (27-124)||(16180358-16180454)
chr7 (38-126)||(9216302-9216389)
chr7 (27-126)||(43317443-43317542)
chr7 (27-110)||(27393261-27393344)
chr7 (27-88)||(38160580-38160641)
[»] chr5 (13 HSPs)
chr5 (15-126)||(17208074-17208185)
chr5 (15-126)||(32473383-32473494)
chr5 (12-126)||(30622705-30622818)
chr5 (27-126)||(7617133-7617232)
chr5 (27-126)||(2614650-2614749)
chr5 (27-126)||(22512305-22512404)
chr5 (27-126)||(38470579-38470678)
chr5 (27-126)||(41334664-41334763)
chr5 (27-124)||(5256997-5257094)
chr5 (27-126)||(18033982-18034081)
chr5 (54-126)||(33855071-33855143)
chr5 (27-126)||(33801469-33801568)
chr5 (69-124)||(25915030-25915085)
[»] scaffold0100 (1 HSPs)
scaffold0100 (15-126)||(35445-35556)
[»] scaffold0385 (1 HSPs)
scaffold0385 (27-126)||(11251-11350)
[»] scaffold0119 (1 HSPs)
scaffold0119 (27-126)||(685-784)
[»] scaffold0038 (1 HSPs)
scaffold0038 (27-125)||(112656-112754)
[»] scaffold0187 (2 HSPs)
scaffold0187 (27-126)||(14189-14288)
scaffold0187 (27-126)||(24517-24616)
[»] scaffold0157 (1 HSPs)
scaffold0157 (27-126)||(23422-23521)


Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 496
Target Start/End: Original strand, 10678141 - 10678604
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||| |||||    
T  10678141 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgta------------tgattaaagggtattcat 10678228  T
Q  115 gtaacattttccnnnnnnnnnnnnnngttgtaattacaaattaagccgcctgaacacctttagccaaaccttaaacaccacatcacaatgcaagaagatg 214  Q
    ||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10678229 gtaacattttccttttttttgttg--gttgtaattacaaattaagccgcctgaacacctttagccaaaccttaaacaccacatcacaatgcaagaagatg 10678326  T
Q  215 tgagaagaactttcctcaccaccaccacaaaaagcacaattctaagaagcacccggtgttaagacatttctccttgagaaattaatctttgttgagatat 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  10678327 tgagaagaactttcctcaccaccaccacaaaaagcacaattctaagaagcacccggtgttaagacatttctccttgagaaattaatctttgttgggata- 10678425  T
Q  315 gattgatctaaaaggagtttcctagagatatcaacggtctttgatgacttttaaccattaccttccaacaactacacaccctctccccatatttacacct 414  Q
       ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  10678426 ---tgatctagaaggagtttccttgagatatcaacggtctttgatgacttttaaccattaccttccaacaaccacacaccctctccccatatttacactt 10678522  T
Q  415 gaggacatatttccaaaggatgttccccttggatcaatctccaaagtcatttaaccaatagacttaaatttaccactctaac 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10678523 gaggacatatttccaaaggatgttccccttggatcaatctccaaagtcatttagccaatagacttaaatttaccactctaac 10678604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 35181627 - 35181516
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||    
T  35181627 gagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcat 35181528  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  35181527 gtaacattttcc 35181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 34304899 - 34304788
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||||| |||||||    
T  34304899 gagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcat 34304800  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  34304799 gtaacattttcc 34304788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 16603615 - 16603726
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||  |||||||||| |||| |||||||||||||||||||| |||    
T  16603615 gagaggagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgtctttaatgcatggggtgtataataaggtgtatgattaaagggtgtgcat 16603714  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  16603715 gtaacattttcc 16603726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 18066707 - 18066818
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||| ||||| ||||||||||  ||||||||||||||||||||||    
T  18066707 gagaggagatgaaagagaaagtatggttgtgagatgaaattactaaaatatccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcat 18066806  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  18066807 gtaacattttcc 18066818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 16358822 - 16358933
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttc-a 113  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||| | ||||||  ||||| |||||||||||||||||||||||||||| ||| |    
T  16358822 gagaggagatgaaaaagaaagtatggttgtgagatgaatttatcaaaatattcttaatgcatgggatgtacaatagggtgtatgattaaagggtcttcaa 16358921  T
Q  114 tgtaacattttc 125  Q
    ||||||||||||    
T  16358922 tgtaacattttc 16358933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 33629982 - 33630091
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||| ||||||||||||| |||| ||||||||| ||||  || |||||||||||  |||||||||||||||||||||| |    
T  33629982 gagaggagatgaaagagaaagtatagttgtgagatgaaattactaaaatgtccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgt 33630081  T
Q  115 gtaacatttt 124  Q
    ||||||||||    
T  33630082 gtaacatttt 33630091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 1375641 - 1375542
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| | |||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||||| |||| ||||||||||||| |||||||    
T  1375641 aagataaagtgtagttgtgagataaatttaccaaaatatccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaattttcc 1375542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 20148854 - 20148762
Alignment:
Q  32 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||||||| |||||||||| || ||||||| ||||||||||| ||||||||||||    
T  20148854 aaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 20148762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 5755002 - 5754903
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||||||||| |||||||| || |||| || |||| |||||||||||||||||||||    
T  5755002 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacattttcc 5754903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 11582865 - 11582766
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  11582865 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 11582766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 29705461 - 29705362
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |||||||  | ||||||||||||||||||||||||||    
T  29705461 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 29705362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 36743484 - 36743583
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  36743484 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 36743583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 29800951 - 29801048
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||| ||||||||||||    
T  29800951 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 29801048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 42295294 - 42295197
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||| |||||||||  |||||| || ||||||||||||||||||||||||    
T  42295294 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42295197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 19386554 - 19386670
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatg-----gggtgtacaatagggtgtatgattaaagggtg 109  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||  | ||||||  |||     |   ||| ||||||||||||||||||||||||    
T  19386554 gagaggagatgaaagagaaagtatagttgtgagatgaatttatcaaaacattcttaatgcatgaaagagaaagtataatagggtgtatgattaaagggtg 19386653  T
Q  110 ttcatgtaacattttcc 126  Q
    |||||||||||||||||    
T  19386654 ttcatgtaacattttcc 19386670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 40528635 - 40528735
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacattttc 125  Q
    |||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||||| |||| | || || ||||||||||||||||  ||||||    
T  40528635 aagagaaagtgtggttgtgagataaatttatcaaaatgtccctaatatatggggtgtacaatggggtttgtgaataaaagggtgttcatgtattattttc 40528734  T
Q  126 c 126  Q
    |    
T  40528735 c 40528735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 26125734 - 26125637
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| |  ||||||| ||||||||||| ||||||||||||    
T  26125734 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 26125637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 42699351 - 42699259
Alignment:
Q  32 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    ||||| ||||||||||||||| |||| ||||| ||| ||||| ||  |||||||||| ||||||| || ||||||||||||||||||||||||    
T  42699351 aaagtgtggttgtgagatgaacttacaaaaatatccataatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 42699259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 30660743 - 30660842
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||| ||||||| |||||||||| ||| ||||| || ||||||||||| || ||||  | ||||||||||||||||||||||||||    
T  30660743 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacattttcc 30660842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 31384763 - 31384672
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaa 118  Q
    |||| ||||| ||||||||||||||| |||||||||| | | ||||| ||||||||||||||||  |||| || ||||||||||||||||||    
T  31384763 aagataaagtgtggttgtgagatgaacttaccaaaatattcctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaa 31384672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 42197436 - 42197535
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || | |||| |||| ||||||| || |||| |||||||||||||||||||||    
T  42197436 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacattttcc 42197535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 30912575 - 30912660
Alignment:
Q  39 ggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||||||||||||| ||||||||||  || ||||| |||  ||||||||| ||||||| || ||||||||||||||||||||||||    
T  30912575 ggttgtgagatgaacttaccaaaatacccctaatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 30912660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 2165964 - 2166063
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||| ||||||||| |||||||||| ||  ||||| ||||||| |||||| ||||||| || |||| ||||||||||||| |||||||    
T  2165964 aagataaagtgtggttatgagatgaacttaccaaaatatctctaatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatattttcc 2166063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 2547095 - 2546996
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| ||| |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  2547095 aagataaagtgtggttgtgagatgaacttactaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 2546996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 45397404 - 45397317
Alignment:
Q  38 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 125  Q
    ||||||||||||||| |||| ||||| ||| ||||| || ||||||| ||| ||||||| || ||||||||||||| |||||||||||    
T  45397404 tggttgtgagatgaacttacaaaaatatccctaatacatagggtgtagaatggggtgtaggaataaagggtgttcacgtaacattttc 45397317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 3743870 - 3743773
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| ||| |||||| | |||||||||||||||||| ||| ||  | |||| ||||||||||  ||| ||||||||    
T  3743870 aagataaagtgtggttgtgagatgaacttatcaaaatatacttaatatatggggtgtataatgggagggatgaataaagggtgtatatggaacatttt 3743773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 9241651 - 9241594
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgta 84  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| |||||||| |||||||    
T  9241651 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatatatagggtgta 9241594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 43892435 - 43892398
Alignment:
Q  234 caccaccacaaaaagcacaattctaagaagcacccggt 271  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  43892435 caccaccacaaaaagcacaattcaaagaggcacccggt 43892398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 35003405 - 35003294
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35003405 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcat 35003306  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  35003305 gtaacattttcc 35003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 48119739 - 48119628
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  48119739 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcat 48119640  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  48119639 gtaacattttcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 44112788 - 44112677
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||    
T  44112788 gagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcat 44112689  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  44112688 gtaacattttcc 44112677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 38113184 - 38113295
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  38113184 gagaggagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcat 38113283  T
Q  115 gtaacattttcc 126  Q
     |||||||||||    
T  38113284 ataacattttcc 38113295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 38336029 - 38335918
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||| ||||||||| ||||||||||||||||||||||||    
T  38336029 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcat 38335930  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  38335929 gtaacattttcc 38335918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 45639721 - 45639832
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||    
T  45639721 gagaggagatgaaagagaaagtatgattgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcat 45639820  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  45639821 gtaacattttcc 45639832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 46168494 - 46168383
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  || |||||||||||||| | ||||||||||||||||||||    
T  46168494 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcat 46168395  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  46168394 gtaacattttcc 46168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 45427734 - 45427845
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||| ||||||||||||||||||||||||| ||| |||||    
T  45427734 gagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcat 45427833  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  45427834 gtaacattttcc 45427845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 41065262 - 41065153
Alignment:
Q  17 gaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgt 116  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  41065262 gaggagaggaaagagaaagtatggttgtgagatgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgt 41065163  T
Q  117 aacattttcc 126  Q
    ||||||||||    
T  41065162 aacattttcc 41065153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 45705936 - 45705825
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||| |||||||||||  ||||||||||||||||||||||    
T  45705936 gagaggagatgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacaatagaatgtatgattaaagggtgttcat 45705837  T
Q  115 gtaacattttcc 126  Q
     |||||||||||    
T  45705836 ataacattttcc 45705825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 35000102 - 35000213
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| |||  || |||||||| ||||||||||||| |||||||||    
T  35000102 gagaggagatgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcat 35000201  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  35000202 gtaacattttcc 35000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 26585573 - 26585462
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||  |||||||||||||||  ||||||||||||||  |||||||    
T  26585573 gagaggagatgaaagagaaagtatgattgcgagatgaatttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcat 26585474  T
Q  115 gtaacattttcc 126  Q
     |||||||||||    
T  26585473 ctaacattttcc 26585462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 37814877 - 37814778
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||| |||||||||||||||| ||||||||| ||||||||||||||  | ||||||| ||||||||||| ||||||||||||||    
T  37814877 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 37814778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 43571087 - 43571186
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  43571087 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 43571186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 2497568 - 2497660
Alignment:
Q  32 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| |  ||||||| |||| |||||| ||||||||||||    
T  2497568 aaagtgtggttgtgagatgaacttaccaaaatatccttaatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttt 2497660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 5489875 - 5489776
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  5489875 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 5489776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 23989524 - 23989624
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacattttc 125  Q
    |||| ||||| |||||||||||| ||||||||||||| ||| ||||| || |||| |||||| | ||||||| || ||||||||||||||||||||||||    
T  23989524 aagataaagtgtggttgtgagataaatttaccaaaatatccctaatacatagggtatacaattgagtgtatgaataaaagggtgttcatgtaacattttc 23989623  T
Q  126 c 126  Q
    |    
T  23989624 c 23989624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 14427394 - 14427347
Alignment:
Q  79 ggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14427394 ggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 14427347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 48498963 - 48499062
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||| |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  48498963 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 48499062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 750306 - 750405
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||| ||||||||||||| |||||| ||| | ||| |||||||||||||| ||||||| ||   ||||||||||| ||||||||||||    
T  750306 aagataaagtgtggttttgagatgaatttatcaaaatatccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacattttcc 750405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 24769500 - 24769599
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||| | ||| |||||||||| ||| ||||| |||||||||||||| | |||||  | |||| |||||||||| ||||||||||    
T  24769500 aagataaagtgtggttgtgataagaacttaccaaaatatccctaatacatggggtgtacaatggagtgtagaaataaaaggtgttcatgaaacattttcc 24769599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 7447924 - 7447828
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||  ||||| ||||| |||||||| || |||| || |||||| |||||||||||||||||    
T  7447924 aagataaagtgtggttgtgagatgaacttatcaaaatatctgtaatacatggg-tgtacaatgggatgtaggaataaaggatgttcatgtaacatttt 7447828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 4401427 - 4401329
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| |||||||||| ||  ||||| ||||||||||||||   ||||| | || |||| ||||||||||| ||||||    
T  4401427 aagataaagtgtggttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaatgaagtgtaggaataaaagagtgttcatgtatcatttt 4401329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 50448272 - 50448360
Alignment:
Q  38 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||||| ||||||| |||| ||||| ||| ||||| ||  |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  50448272 tggttgtaagatgaacttacaaaaatatccctaatacataaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 50448360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 25996379 - 25996268
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  25996379 gagaggagatgaaagagaaaatatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaataagatgtatgattaaagggtgttcat 25996280  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  25996279 gtaacattttcc 25996268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 9434235 - 9434124
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||||||    
T  9434235 gagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcat 9434136  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  9434135 gtaacattttcc 9434124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 10457881 - 10457992
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  10457881 gagaggagatgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcat 10457980  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  10457981 gtaacattttcc 10457992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 4190257 - 4190365
Alignment:
Q  18 aggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  ||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  4190257 aggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgta 4190356  T
Q  118 acattttcc 126  Q
    |||||||||    
T  4190357 acattttcc 4190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 51757703 - 51757593
Alignment:
Q  16 agaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatg 115  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||  ||| ||||||||||||||||||||||||||||||||| |||    
T  51757703 agaggagatgaaagagaaagtatggttgtgagatgaaattactaaaatgtccataatgcatgaggtgtacaatagggtgtatgattaaagggtgtttatg 51757604  T
Q  116 taacattttcc 126  Q
    ||| |||||||    
T  51757603 taatattttcc 51757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 34791940 - 34791829
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||||||||| ||||  ||| ||| ||||||| ||||||||||||||||||||||||    
T  34791940 gagaggagatgaaagagaaagtatggttgtgagatgaaattattaaaatgtccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcat 34791841  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  34791840 gtaacattttcc 34791829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 52627966 - 52628077
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||||  ||| ||||||||||||| |||||||||||||||||||||     
T  52627966 gagagaagatgaaagagaaagtatgattgtgagatgaatttaccaaaatatacttaatgcatgaggtgtacaataggatgtatgattaaagggtgttcac 52628065  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  52628066 gtaacattttcc 52628077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 45126934 - 45127028
Alignment:
Q  32 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| ||||||||||| ||||||||||||||    
T  45126934 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 45127028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 42100776 - 42100688
Alignment:
Q  38 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  42100776 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 42100688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 40808964 - 40808865
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| ||||||| || |||| |||||| ||||||||||||||    
T  40808964 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacattttcc 40808865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 46941152 - 46941053
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||||||||||||||  | |||| || ||||||||||||||||||||||||||    
T  46941152 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacattttcc 46941053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 54237195 - 54237097
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 125  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || |||||||||||||||||||||||||    
T  54237195 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttc 54237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 24688403 - 24688502
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| | |||||  | ||||||||||||||||||||||||||    
T  24688403 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 24688502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 25413780 - 25413681
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| ||  |||||||||| ||||||| || ||||||||||||||||||||||||||    
T  25413780 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 25413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 36150229 - 36150130
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| | ||| || ||||||| ||| |||||||||| |||||||| |||||||||||||||||    
T  36150229 aagataaagtgtggttgtgagatgaacttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacattttcc 36150130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 54246149 - 54246248
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||  ||||| || ||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  54246149 aagataaagtgtggttgtgagatgaacttacaaaaatatctctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 54246248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 40480848 - 40480750
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 125  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || || |||||||| |||  ||||| |||||||||||||||||||||||||    
T  40480848 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacattttc 40480750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 42394420 - 42394518
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 125  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| |  |||| || |||||||||||||||||||||||||    
T  42394420 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 42394518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 27748662 - 27748565
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||||| ||||||||||||| |||||||||| ||| ||||| ||  |||||| |||  ||||||||| |||| |||||||||||||||||||    
T  27748662 aagataaagtattgttgtgagatgaacttaccaaaatatccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttt 27748565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 53581859 - 53581956
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||| ||||| || || |||||||| | |||||||| ||||| ||||||||||||||||||    
T  53581859 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttt 53581956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 53273684 - 53273784
Alignment:
Q  26 aaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 125  Q
    ||||| ||||||||||||||||||||| |||||||||| ||| ||||| ||||| ||||||||  ||| || || |||| | ||||||| ||||||||||    
T  53273684 aaagataaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacattttc 53273783  T
Q  126 c 126  Q
    |    
T  53273784 c 53273784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 47191027 - 47191125
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||  ||||| ||||| ||||||||  |||||| || ||||||||||||||||||||||||||    
T  47191027 aagataaagtgtggttgtgagatgaacttatcaaaatatctctaatacatggg-tgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 47191125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 29558249 - 29558330
Alignment:
Q  41 ttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 122  Q
    |||||||||||||||||||| || | | |||||||| |||||||||||  | ||||||| |||||||||||||| |||||||    
T  29558249 ttgtgagatgaatttaccaatatattcctaatatatagggtgtacaatgagatgtatgaataaagggtgttcatataacatt 29558330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 51249407 - 51249323
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgtt 111  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||  ||| |||||| ||| || ||  ||| |||||||||||    
T  51249407 aagagaaagtgtggttgtgagatgaatttaccaaaatatccttaatgcatgaggtgtataatgggttgggtgaataaagggtgtt 51249323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 52629927 - 52629870
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgta 84  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||||||||| || |||||||    
T  52629927 aagataaagtgtggttgtgagatgaacttacaaaaatatccttaatacatagggtgta 52629870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 33242514 - 33242403
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  33242514 gagaggagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcat 33242415  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  33242414 gtaacattttcc 33242403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 27441653 - 27441544
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||    
T  27441653 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcat 27441554  T
Q  115 gtaacatttt 124  Q
    ||||||||||    
T  27441553 gtaacatttt 27441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 33254025 - 33253913
Alignment:
Q  15 gagaggagatgaaa-gagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttca 113  Q
    |||||||||||||| || |||||||| |||||||||||||||||||| |||||| ||||  ||||||||||||||||||||| |||||||| ||||||||    
T  33254025 gagaggagatgaaaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttca 33253926  T
Q  114 tgtaacattttcc 126  Q
    |||||||||||||    
T  33253925 tgtaacattttcc 33253913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 3213499 - 3213400
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||  | ||||||| ||||||||||| ||||||||||||||    
T  3213499 aagataaagtatggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 3213400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 13743222 - 13743321
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||||||||||||||||||    
T  13743222 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13743321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 13748722 - 13748821
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||||||||||||||||||    
T  13748722 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13748821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 24203993 - 24204085
Alignment:
Q  32 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||| |||| ||||||||||||||||| || |||| |||||||||||||||||||    
T  24203993 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttt 24204085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 7273336 - 7273435
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| || |||||||||||| |||||||||| ||  ||||| ||||||||||||||| |||||| || ||||||||||||||||||||||||||    
T  7273336 aagataaagtgtgattgtgagatgaacttaccaaaatatctctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacattttcc 7273435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 9698334 - 9698433
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  9698334 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 9698433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 26670010 - 26670109
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||| ||||||||||  |||||| || ||||||||||||||||||||||||||    
T  26670010 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 26670109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 31109211 - 31109322
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||| | |||| || || |||||||| |||||| ||| || |  |||||||||| ||| || ||||||||||||||||||||||    
T  31109211 gagaggagatgaaagagaaaatgtggtcgtaagttgaatttatcaaaatatccctagtgcatggggtgtataatgggatgtatgattaaagggtgttcat 31109310  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  31109311 gtaacattttcc 31109322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 21293678 - 21293777
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||| |||||||||||||||| ||||||||| |||||||||||| |    ||||||| ||||||||||| ||||||||||||||    
T  21293678 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacattttcc 21293777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 26466898 - 26466799
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| ||||||||||  || ||||| |||| ||||||||| ||||||| || ||||||||||| ||||||||||||||    
T  26466898 aagataaagtgtggttgtgagatgaacttaccaaaataaccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacattttcc 26466799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 30014442 - 30014343
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||||||||||||||||||| |||||||||| | | ||||| ||||| |||| ||| || |||| || ||||||||||||||||||||||||||    
T  30014442 aagataaagtatggttgtgagatgaacttaccaaaatatgcctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacattttcc 30014343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 7292846 - 7292747
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||| |||  ||||||||| |||| ||||||| |||||||||||||    
T  7292846 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacattttcc 7292747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 21280028 - 21279929
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| |||||||||||||||||||||||||| ||| ||||| ||||| ||| |||| |  ||||  | ||||||||||||||||||||||||||    
T  21280028 aagataaagtgtggttgtgagatgaatttaccaaaatatccctaatacatgggatgtgcaatggaatgtagaaataaagggtgttcatgtaacattttcc 21279929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 7367643 - 7367549
Alignment:
Q  32 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||| ||||| ||||||||  ||||||||| |||| | ||||||| |||||||||||    
T  7367643 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacattttcc 7367549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 30736081 - 30735984
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| || |||||||||||| |||||||||| ||  ||||| ||| |||||||||| ||||||| || ||||  ||||||||||||||||||    
T  30736081 aagataaagtgtgattgtgagatgaacttaccaaaatatcactaatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttt 30735984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 7e-47; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 17619141 - 17619252
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  17619141 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcat 17619240  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  17619241 gtaacattttcc 17619252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 32728468 - 32728357
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||    
T  32728468 gagaggagatgaaagagaaagtatgattgtgagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcat 32728369  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  32728368 gtaacattttcc 32728357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 55272365 - 55272476
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||| |||||||    
T  55272365 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcat 55272464  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  55272465 gtaacattttcc 55272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 712070 - 711960
Alignment:
Q  16 agaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatg 115  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  || ||||||||||||||||||||||||||||||||||||||    
T  712070 agaggagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatg 711971  T
Q  116 taacattttcc 126  Q
    |||||||||||    
T  711970 taacattttcc 711960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 960862 - 960970
Alignment:
Q  18 aggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgta 117  Q
    |||||||||||||||||||| | || | |||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||    
T  960862 aggagatgaaagagaaagtacgattataagatgaatttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgta 960961  T
Q  118 acattttcc 126  Q
    |||||||||    
T  960962 acattttcc 960970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 48435568 - 48435679
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||||  ||||||||||||||||||||| |||||||| |||||||||    
T  48435568 gagaggagatgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcat 48435667  T
Q  115 gtaacattttcc 126  Q
    |||||| |||||    
T  48435668 gtaacactttcc 48435679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 35037116 - 35037007
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||| |||||| ||| |||||||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||| |||||||||| ||||    
T  35037116 gagaggagaagaaagaaaaaatatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcat 35037017  T
Q  115 gtaacatttt 124  Q
    ||||||||||    
T  35037016 gtaacatttt 35037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 3756242 - 3756344
Alignment:
Q  21 agatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaaca 120  Q
    |||||||||| |||||||| ||||||||| ||||||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  3756242 agatgaaaga-aaagtatgattgtgagataaatttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaaca 3756340  T
Q  121 tttt 124  Q
    ||||    
T  3756341 tttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 46827699 - 46827806
Alignment:
Q  19 ggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaa 118  Q
    |||||||||||||||| |||| ||||||||| |||||||||||| || ||||||  || ||||||||||||| |||||||||||||||||||||||||||    
T  46827699 ggagatgaaagagaaaatatgtttgtgagataaatttaccaaaacgttcttaatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaa 46827798  T
Q  119 cattttcc 126  Q
    ||||||||    
T  46827799 cattttcc 46827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 38851624 - 38851515
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||| ||||||| || | |||||||||||||| | |||||    
T  38851624 gagaggagatgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacattatgatgtatgattaaaggatattcat 38851525  T
Q  115 gtaacatttt 124  Q
    ||||||||||    
T  38851524 gtaacatttt 38851515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 19880062 - 19879987
Alignment:
Q  18 aggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggt 93  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19880062 aggagatgaaagagaaagtatgattgtgagatgaatttaccaaaatgtccataatatatggggtgtacaatagggt 19879987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 28982835 - 28982922
Alignment:
Q  39 ggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||    
T  28982835 ggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatagggtgtagaaataaagggtgttcatgtaacattttcc 28982922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 28988572 - 28988473
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||||||||| ||||| ||||||||||||| |||||||||| || |  ||||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  28988572 aagagaaagtgtggttatgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttcc 28988473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 36004105 - 36004174
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgta 84  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  36004105 gagaggagatgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaatatatggggtgta 36004174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 23036079 - 23035980
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| |||||||| ||||||||||||||||||| || ||||||  ||||||||||||||||||    
T  23036079 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacattttcc 23035980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 33703240 - 33703141
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||||||||||||||| | ||||  | ||||||||||||||||||||||||||    
T  33703240 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 33703141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 27864658 - 27864564
Alignment:
Q  32 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||| ||||||||||||||    
T  27864658 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttcc 27864564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 27893843 - 27893940
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||| ||||||||||||    
T  27893843 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27893940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 1771278 - 1771366
Alignment:
Q  38 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||||||||||||| ||| |||||| ||  ||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  1771278 tggttgtgagatgaacttatcaaaatatctctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1771366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 55966358 - 55966446
Alignment:
Q  38 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||| |||||||| || ||||||| ||||||||||| ||||||||||||||    
T  55966358 tggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 55966446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 49229684 - 49229764
Alignment:
Q  46 agatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||||||||||||| ||| ||||||||  |||  ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  49229684 agatgaatttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacattttcc 49229764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 25051792 - 25051693
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| || |||||||||||| |||||||||| ||| ||||| || ||||||||||| ||||||| || ||||| |||||||||| |||||||||    
T  25051792 aagataaagtgtgattgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacattttcc 25051693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 27316714 - 27316813
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||| ||||||||| |||||||||| ||||||||| |||||||||| |||  |||||| || |||||||||||| | |||||||||||    
T  27316714 aagataaagtgtggttatgagatgaacttaccaaaatatccttaatacatggggtgtataatgaggtgtaggaataaagggtgttcgtttaacattttcc 27316813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 27550408 - 27550309
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||| ||||||| |||||||||| ||| ||||| ||| |||||||||| | |||||  | ||||||||||||||||||||||||||    
T  27550408 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 27550309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 41878505 - 41878407
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 125  Q
    ||||||| || ||||||||||||||| ||| |||||| ||| ||||  || |||||||||||  ||||||||| ||||| |||||||||||||||||||    
T  41878505 aagagaaggtttggttgtgagatgaacttatcaaaatatccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacattttc 41878407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 48463456 - 48463550
Alignment:
Q  32 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||||||||||||||||||| |||||||||| ||| ||||| ||||| ||||||||    ||||||| |||| |||||| ||||||||||||||    
T  48463456 aaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacattttcc 48463550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 31681001 - 31680904
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||||| |||||||||||| |  ||||||| |||| |||||| | ||||||||||    
T  31681001 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatacggggtgtacaatggaatgtatgaataaatggtgtttacgtaacatttt 31680904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 41327544 - 41327641
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||||||||| ||| |||||||||||||||||||||||||| || |  ||  |||||||||| |||||| ||| ||||||||||  ||||||||||||    
T  41327544 aagagaaagtgtggatgtgagatgaatttaccaaaatgtccgtagtgcataaggtgtacaatggggtgtgtgaataaagggtgtctatgtaacatttt 41327641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 35017831 - 35017733
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| || || ||||||||||||||  | | || || ||||||||||||||||||||||||||    
T  35017831 aagataaagtgtggttgtgagatgaacttaccaaaatatcccta-tacatggggtgtacaatgagatataggaataaagggtgttcatgtaacattttcc 35017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 41848070 - 41847971
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||||||||| |||||||| ||||||||| ||||||||||  ||||  ||||||||||||||  ||||| |||  ||||| ||||| |||||||||||||    
T  41848070 aagagaaagtgtggttgtgcgatgaatttgccaaaatgtctctaatgcatggggtgtacaatgaggtgtgtgaaaaaaggatgttcttgtaacattttcc 41847971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 45490314 - 45490413
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| |||||||||||||||||||| ||| | ||| ||||| ||| |||||||||| || ||||| | ||||  ||||||||||||||||||||    
T  45490314 aagataaagtgtggttgtgagatgaatttactaaagtatccctaatacatgaggtgtacaattggatgtataaataaaatgtgttcatgtaacattttcc 45490413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 43514698 - 43514784
Alignment:
Q  38 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    ||||||||||||||| ||||||||||  || ||||| |||  ||||||||| | ||||| || ||||||||||||||||||||||||    
T  43514698 tggttgtgagatgaacttaccaaaataaccctaatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 43514784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 43949802 - 43949900
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||||||||||||||  |||| | | || |||||||||||||||| ||||||    
T  43949802 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgcaggaataaaagggtgttcatgtatcatttt 43949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 12497055 - 12496956
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| || |||| ||||||| |||||||||| ||  ||||| ||||| |||||||| | ||||| || |||||||||||||| |||||||||||    
T  12497055 aagataaagtgtgattgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 12496956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 39631200 - 39631102
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||| ||||||||||  |||||| | || |||||| ||||||||| ||||||    
T  39631200 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaaagggggttcatgtatcatttt 39631102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 23204779 - 23204875
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 123  Q
    |||| ||||| ||||||||| ||||| |||| ||||| ||| ||||| || || |||||||| || |||| || ||||| |||||||||||||||||    
T  23204779 aagataaagtgtggttgtgacatgaacttacaaaaatatccctaatacataggatgtacaatgggatgtaggaataaagagtgttcatgtaacattt 23204875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 36004168 - 36004204
Alignment:
Q  90 gggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||||||||||||||||| |||||||||||||||||    
T  36004168 gggtgtatgattaaagggtattcatgtaacattttcc 36004204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 47210086 - 47209992
Alignment:
Q  152 aaattaagccgcctgaacacctttagccaaaccttaaacaccacatcacaatgcaagaagatgtgagaagaactttcctcaccaccaccacaaaa 246  Q
    ||||| |||| | |||||||||||  |||  |||| | |||||| |||||||||||||| || |||| |||| |||||||||||||  |||||||    
T  47210086 aaattgagccacatgaacaccttttcccactccttcatcaccacctcacaatgcaagaaaatatgagcagaagtttcctcaccacctgcacaaaa 47209992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 43114668 - 43114557
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||    
T  43114668 gagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcat 43114569  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  43114568 gtaacattttcc 43114557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 11825643 - 11825752
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||    
T  11825643 gagaggagatgaaagagaaagtatgattgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcat 11825742  T
Q  115 gtaacatttt 124  Q
    ||||||||||    
T  11825743 gtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 41281963 - 41282072
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||    
T  41281963 gagaggagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcat 41282062  T
Q  115 gtaacatttt 124  Q
    ||||||||||    
T  41282063 gtaacatttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 18491813 - 18491705
Alignment:
Q  18 aggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgta 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  18491813 aggagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgta 18491714  T
Q  118 acattttcc 126  Q
    |||||||||    
T  18491713 acattttcc 18491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 966827 - 966934
Alignment:
Q  19 ggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaa 118  Q
    ||||||||||||||||||||| |||||||||||||||||||||| || ||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  966827 ggagatgaaagagaaagtatgtttgtgagatgaatttaccaaaacgttcttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaa 966926  T
Q  119 cattttcc 126  Q
    ||||||||    
T  966927 cattttcc 966934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 12415449 - 12415560
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||    
T  12415449 gagaggagatgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcat 12415548  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  12415549 gtaacattttcc 12415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 12427509 - 12427620
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||    
T  12427509 gagaggagatgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcat 12427608  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  12427609 gtaacattttcc 12427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 16804074 - 16803968
Alignment:
Q  20 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 119  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  16804074 gagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaac 16803975  T
Q  120 attttcc 126  Q
    |||||||    
T  16803974 attttcc 16803968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 16843356 - 16843250
Alignment:
Q  20 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 119  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  16843356 gagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaac 16843257  T
Q  120 attttcc 126  Q
    |||||||    
T  16843256 attttcc 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 4299409 - 4299518
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||||||||| |||||  |||| |||||||||||||||||||||||||||||||||||    
T  4299409 gagaggagattaaagagtaagtatgattgtgagatgaatttaccaaaatgtcattaatgcatggagtgtacaatagggtgtatgattaaagggtgttcat 4299508  T
Q  115 gtaacatttt 124  Q
     |||||||||    
T  4299509 ataacatttt 4299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 14285787 - 14285676
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||  |    
T  14285787 gagaggagatgaaagagaaagtatgactctgagatgaatttaccaaaatatctttaatatatagggtgtacaatagggtgtatgattaaagggtgtttgt 14285688  T
Q  115 gtaacattttcc 126  Q
    |||| |||||||    
T  14285687 gtaatattttcc 14285676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 34895730 - 34895841
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||||  ||||||||||||||||||||| |||||||| |||||||||    
T  34895730 gagaggagatgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcat 34895829  T
Q  115 gtaacattttcc 126  Q
    |||||| |||||    
T  34895830 gtaacactttcc 34895841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 34817777 - 34817875
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 125  Q
    |||||||||| |||||||||||||||||||||||||||| | || |  ||||||||||||||  ||||| ||| |||||||||||||||||||||||||    
T  34817777 aagagaaagtgtggttgtgagatgaatttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacattttc 34817875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 12531652 - 12531744
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | || ||||   || |||||||||| |||||||||||||||||||    
T  12531652 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaa-gcccataatgcttgaggtgtacaattgggtgtatgattaaagggt 12531744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 1750513 - 1750414
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| || ||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  1750513 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 4451939 - 4452026
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgatta 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||  ||  ||||||||||| | ||||||||||    
T  4451939 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaatgcatatggtgtacaataagatgtatgatta 4452026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 4764727 - 4764826
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| |||||||||||||||||||||||||| |   ||||| |||||||||||||||||||||| || |||| |||||| ||||||||||||||    
T  4764727 aagataaagtgtggttgtgagatgaatttaccaaaatatttataatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacattttcc 4764826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 6518484 - 6518566
Alignment:
Q  41 ttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||||||||||| |||||||||||||| ||||  |||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  6518484 ttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaa-ggtgttcatgtaacatttt 6518566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 30838731 - 30838632
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||||||||||||||| | ||||  | ||||||||||||||||||||||||||    
T  30838731 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 30838632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 12302254 - 12302353
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| || ||||||||||| |||||||  | ||||||||||||||||||||||||||    
T  12302254 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 12302353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 13780736 - 13780835
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||||||||| ||||||||||||||||||| |||||| ||| |||| |||||||||||||||  ||||| ||| ||||  ||||| ||||||||||||||    
T  13780736 aagagaaagtgtggttgtgagatgaatttatcaaaatatccctaatgtatggggtgtacaatgaggtgtgtgaataaaatgtgttgatgtaacattttcc 13780835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 16096846 - 16096747
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| |||||||||||| || | |||||||| ||| ||||| |||||||||| ||| ||||||| || ||||||||||||||||||||||||||    
T  16096846 aagataaagtgtggttgtgagattaactcaccaaaatatccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacattttcc 16096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 19047256 - 19047158
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 125  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| |  |||| || |||||||||||||||||||||||||    
T  19047256 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 19047158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 43490402 - 43490499
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||| ||||||||| |||||||||| ||| ||||| || | ||||||||| || |||| || ||||||||||||||||||||||||    
T  43490402 aagataaagtgtggttatgagatgaacttaccaaaatatccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 43490499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 7070504 - 7070418
Alignment:
Q  38 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    ||||||| ||||||||||| ||||||||||  |||| |||| |  |||||| || ||||||| ||||||||||||||||||||||||    
T  7070504 tggttgtaagatgaatttatcaaaatgtccccaataaatggaggttacaatgggatgtatgaataaagggtgttcatgtaacatttt 7070418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 8896587 - 8896681
Alignment:
Q  30 agaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    ||||||| || ||||||||||||||||||||||| | | || | ||| ||||||||||| |  ||| ||| ||||||||||||||||||||||||    
T  8896587 agaaagtgtgattgtgagatgaatttaccaaaatattcctattgtatagggtgtacaatggaatgtgtgaataaagggtgttcatgtaacatttt 8896681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 43335764 - 43335863
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| ||||| ||||| ||||||||  |||||| || |||| | ||||||| |||||||||||    
T  43335764 aagataaagtgtagttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacattttcc 43335863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 33229381 - 33229303
Alignment:
Q  47 gatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 124  Q
    |||||| |||||||||| ||| ||||| ||||||||||||||  |||||| | || |||||||||||||||| ||||||    
T  33229381 gatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaaagggtgttcatgtatcatttt 33229303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 42026865 - 42026767
Alignment:
Q  30 agaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaa--gggtgttcatgtaacattttcc 126  Q
    ||||||| | |||||||||||||||| ||||||| ||| ||||    ||| |||||||| |  ||||||| ||||  ||||||||||||||||||||||    
T  42026865 agaaagtgtagttgtgagatgaatttgccaaaatatccctaatgcgcgggatgtacaatggaatgtatgaataaattgggtgttcatgtaacattttcc 42026767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 42849864 - 42849916
Alignment:
Q  32 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgta 84  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||||| ||||||||||    
T  42849864 aaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgta 42849916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 42849910 - 42849946
Alignment:
Q  90 gggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||||| || ||||||||||||||||||||||||||    
T  42849910 gggtgtaggaataaagggtgttcatgtaacattttcc 42849946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 45708 - 45817
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||    
T  45708 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcat 45807  T
Q  115 gtaacatttt 124  Q
    ||||||||||    
T  45808 gtaacatttt 45817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 31513398 - 31513287
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||||||||||| ||||||||    
T  31513398 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcat 31513299  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  31513298 gtaacattttcc 31513287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 40237030 - 40236919
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||    
T  40237030 gagaggagatgaaagagaaaatatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcat 40236931  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  40236930 gtaacattttcc 40236919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 31408622 - 31408732
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  ||||| |||||||||| |||||||||||||||||||||||    
T  31408622 gagaggagatgaaagagaaagtatggttgtgaaatgaatttaccaaaatatccttaatgcatgggatgtacaatagagtgtatgattaaagggtgttcat 31408721  T
Q  115 gtaacattttc 125  Q
    |||||||||||    
T  31408722 gtaacattttc 31408732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 27535220 - 27535331
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| | |||| ||||||||||| |||||||||||||||||||||||    
T  27535220 gagaggagatgaaagagaaagtatagttgtgagatgaaattaccaaaatgtctttaacacatggagtgtacaatagagtgtatgattaaagggtgttcat 27535319  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  27535320 gtaacattttcc 27535331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 33384982 - 33384870
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaata-gggtgtatgattaaagggtgttca 113  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  |||| || ||||||| ||||||||||||||| | ||||||    
T  33384982 gagaggagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttca 33384883  T
Q  114 tgtaacattttcc 126  Q
    |||||||||||||    
T  33384882 tgtaacattttcc 33384870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 4638200 - 4638297
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| | |||||||| |||| |||||||||||||||||||    
T  4638200 aagataaagtatggttgtgagatgaacttaccaaaatatccataatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttt 4638297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 10573848 - 10573751
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| |||||||||||||||||||||||||| | | ||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  10573848 aagataaagtgtggttgtgagatgaatttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 44326272 - 44326180
Alignment:
Q  32 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||||||| |||||||||| || ||||||| ||||||||||| ||||||||||||    
T  44326272 aaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 44326180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 5810925 - 5811024
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||| |||||||| ||||||||||| ||||||| || ||||||||| ||||||||||||||||    
T  5810925 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacattttcc 5811024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 24001013 - 24001112
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  24001013 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 24001112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 42538432 - 42538531
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  42538432 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 42538531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 5194232 - 5194331
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||| |||| || |||||||||||||||| |||||| ||||||| | || |||||||||||  ||||||||| |||| |||||||||||||||||||||    
T  5194232 aagagtaagtgtgattgtgagatgaatttatcaaaatatccttaaaacatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 5194331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 35069820 - 35069721
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||| ||||||||||  |||||| || ||||| ||||||||||||||||||||    
T  35069820 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacattttcc 35069721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 43343625 - 43343722
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||| ||||| ||||||||||||||||||||||  | |||| | |||||||||||||||||    
T  43343625 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 43343722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 44416935 - 44417032
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||| ||||| ||||||||||||||||||||||  | |||| | |||||||||||||||||    
T  44416935 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 44417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 5015494 - 5015395
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||| |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  5015494 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 5015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 24280597 - 24280696
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||||||||| || ||||||||||||||||||||||| |   || |  ||||| |||| |||||||||||||| ||||||||||||| ||||||||||||    
T  24280597 aagagaaagtgtgattgtgagatgaatttaccaaaatatttctagtgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacattttcc 24280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 123
Target Start/End: Original strand, 26898408 - 26898499
Alignment:
Q  32 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 123  Q
    ||||| ||||||| ||||||| |||||||||| ||| ||||| ||||  |||||||| |||||||||| |||| ||||||||||||||||||    
T  26898408 aaagtgtggttgtaagatgaacttaccaaaatatccctaatacatggaatgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 45326119 - 45326020
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| || |||||||||||| |||||||||| ||| ||||||||||||||||||||  | ||||||| |||| |||||| |||||||| |||||    
T  45326119 aagataaagtgtgattgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatgtgatgtatgaataaaaggtgtttatgtaacactttcc 45326020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 41861775 - 41861674
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtc-ct-taatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| |||||||||||| || |||||||||| || || ||||| || ||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  41861775 aagataaagtgtggttgtgagataaacttaccaaaatatctctataatacatagggtgtataattgggtgtatgaataaagggtgttcatgtaacatttt 41861676  T
Q  125 cc 126  Q
    ||    
T  41861675 cc 41861674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 42972940 - 42972852
Alignment:
Q  38 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||||||||||||| |||||||||| ||| ||||| ||| |||||||||| | ||||| || |||||| |||||| ||||||||||||    
T  42972940 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacattttcc 42972852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 25664052 - 25663952
Alignment:
Q  206 aagaagatgtgagaagaactttcctcaccaccaccac---aaaaagcacaattctaagaagcacccggtgttaagacatttctccttgagaaattaatct 302  Q
    |||||||  ||||||||||||||||||||||||||||   |||||||||||||| ||||||||  |||   |||||||||||||||||  |||||| |||    
T  25664052 aagaagacatgagaagaactttcctcaccaccaccaccacaaaaagcacaattcaaagaagcatgcgg---taagacatttctccttgtcaaattagtct 25663956  T
Q  303 ttgt 306  Q
    ||||    
T  25663955 ttgt 25663952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 39998475 - 39998408
Alignment:
Q  59 aaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||| ||| ||||| ||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  39998475 aaaatatccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacattttcc 39998408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 32029818 - 32029908
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgta 117  Q
    |||| ||||| ||||||| |||||||||||||||||| ||| ||||| |||||||||||||| ||||||| || ||||  ||||| |||||    
T  32029818 aagataaagtgtggttgttagatgaatttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaaaagtgtttatgta 32029908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 16180358 - 16180454
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| |||||||||||||||||||||||||| |   |||||  ||||||||||||| ||||||| || |||| |||||| ||||||||||||    
T  16180358 aagataaagtgtggttgtgagatgaatttaccaaaatatttataatacgtggggtgtacaat-gggtgtaggaataaatggtgttgatgtaacatttt 16180454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 9216389 - 9216302
Alignment:
Q  38 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||||||||||||| |||||||||| ||  ||||  ||||| ||||||||||| | || || ||||||||||||||||||||||||||    
T  9216389 tggttgtgagatgaacttaccaaaatatctctaatgcatggg-tgtacaataggatataggaataaagggtgttcatgtaacattttcc 9216302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 43317542 - 43317443
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    ||||| |||| || |||||||||||||||| |||||| ||| |||   || || ||||||||  ||||||||| |||| |||||||||||||||||||||    
T  43317542 aagagtaagtgtgattgtgagatgaatttatcaaaatatccctaaagcataggatgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 43317443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 27393261 - 27393344
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgt 110  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| || | |||||||||||| |||| || ||||||||||    
T  27393261 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagagtgtacaataggatgtaggaataaagggtgt 27393344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 38160580 - 38160641
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaat 88  Q
    |||| ||||| | ||||||||||||| |||| ||||| ||| ||||| ||||||||||||||    
T  38160580 aagataaagtgtagttgtgagatgaagttactaaaatatccctaatacatggggtgtacaat 38160641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 17208185 - 17208074
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||||     
T  17208185 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcac 17208086  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  17208085 gtaacattttcc 17208074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 32473383 - 32473494
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||  ||| ||||||||||| ||||||||||||||||||||||||    
T  32473383 gagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatatccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcat 32473482  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  32473483 gtaacattttcc 32473494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 30622705 - 30622818
Alignment:
Q  12 agagagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgtt 111  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||  ||||| | |||||||||||||||||||||||| ||||    
T  30622705 agagagaggagatgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatgggct-tacaatagggtgtatgattaaaggatgtt 30622803  T
Q  112 catgtaacattttcc 126  Q
    |||||||||||||||    
T  30622804 catgtaacattttcc 30622818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 7617232 - 7617133
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||| ||| | |||||||| ||||||||||||||||||||||||||    
T  7617232 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacattttcc 7617133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 2614650 - 2614749
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  2614650 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 2614749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 22512404 - 22512305
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||| ||||||||| | ||||| || ||||||||||||||||||||||||||    
T  22512404 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 22512305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 38470678 - 38470579
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| || |||||| |||||||||||||||| ||||||||| |||||||||||||| |  ||||||| ||||||||||| ||||||||||||||    
T  38470678 aagataaagtgtgattgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacattttcc 38470579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 41334664 - 41334763
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  41334664 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 5257094 - 5256997
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||| ||||||||||||    
T  5257094 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 5256997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 18034081 - 18033982
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| || ||||||||||| | ||||| || ||||||||||||||||||||||||||    
T  18034081 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 18033982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 33855071 - 33855143
Alignment:
Q  54 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||||||||||| | ||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  33855071 ttaccaaaatgttcctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 33801568 - 33801469
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| |||| ||||||||| |||||||  | |||||| |||||||||||||||||||    
T  33801568 aagataaagtgtggttgtgagatgaacttactaaaatatccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacattttcc 33801469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 25915030 - 25915085
Alignment:
Q  69 taatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 124  Q
    ||||| || |||||||||||  |||||| || ||||||||||||||||||||||||    
T  25915030 taatacattgggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 25915085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 35445 - 35556
Alignment:
Q  15 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  ||||||||||||||| |||||||||||||| |||||| ||    
T  35445 gagaggagatgaaagagaaagtatggttgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttat 35544  T
Q  115 gtaacattttcc 126  Q
    ||||||||||||    
T  35545 gtaacattttcc 35556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 11350 - 11251
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||||    
T  11350 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacattttcc 11251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 784 - 685
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||| ||||||||||  |||||| || ||||||||||||||||||||||||||    
T  784 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 112754 - 112656
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 125  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| |  |||| || |||||||||||||||||||||||||    
T  112754 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 112656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 14189 - 14288
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| || || |||||||| |||||||  | ||||||||||||||||||||||||||    
T  14189 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 14288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 24517 - 24616
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| || || |||||||| |||||||  | ||||||||||||||||||||||||||    
T  24517 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 24616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 23422 - 23521
Alignment:
Q  27 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 126  Q
    |||| ||||| || |||| ||||||| |||||||||| ||  ||||| ||||| |||||||| | ||||| || |||||||||||||| |||||||||||    
T  23422 aagataaagtgtgattgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 23521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University