View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_high_1 (Length: 706)
Name: NF6221_high_1
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 656; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 18 - 693
Target Start/End: Complemental strand, 2685984 - 2685309
Alignment:
| Q |
18 |
cattattcattcaaaattgattatcatggtttaccagagattttcctacggaatgatgataacataatatatcgaagtggaccatggaatggtgaaaggt |
117 |
Q |
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| T |
2685984 |
cattattcattcaaaattgattatcatggtttaccagagattttcctacggaatgatgataacataatatatcgaagtggaccatggaatggtgaaaggt |
2685885 |
T |
|
| Q |
118 |
ttagtggtgtaccagagatgcaacatgatacagattcaatagttttcaatttttcatcaaaccaacacggtgttaactactcgtttaccatcggaaatcc |
217 |
Q |
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| T |
2685884 |
ttagtggtgtaccagagatgcaacatgatacagattcaatagttttcaatttttcatcaaaccaacacggtgttaactactcgtttaccatcggaaatcc |
2685785 |
T |
|
| Q |
218 |
atcgattttttctagactagttgtggattcgggtggtcaacttcaacgtcgaacatggatacaaagtatgaaaacatggacaaatttttggtatgcacca |
317 |
Q |
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| T |
2685784 |
atcgattttttctagactagttgtggattcgggtggtcaacttcaacgtcgaacatggatacaaagtatgaaaacatggacaaatttttggtatgcacca |
2685685 |
T |
|
| Q |
318 |
aaagatcaatgtgatagttacagagaatgtggtccttatggtttatgtgacacaaatgcttcacctgtttgtcaatgtgtgaaaggttttagtcctaaga |
417 |
Q |
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| T |
2685684 |
aaagatcaatgtgatagttacagagaatgtggtccttatggtttatgcgacacaaatggttcacctgtttgtcaatgtgtgaaaggttttagtcctaaaa |
2685585 |
T |
|
| Q |
418 |
atgaacaagcttggaaattgagagatgggtctgatgggtgtgtgaggaataagaatttggattgtgagagtgataaatttttacgtatggagaatgtgaa |
517 |
Q |
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| T |
2685584 |
atgaacaagcttggaaattgagagatgggtctgatgggtgtgtgaggaataagaatttggaatgtgagagtgataaatttttacgtatggagaatgtgaa |
2685485 |
T |
|
| Q |
518 |
gttgcctgagacaagctcagtttttgtgaacaagacaatgggaattaaggaatgtggtgatatgtgtcataggaattgttcttgtactggttatgctaat |
617 |
Q |
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| T |
2685484 |
gttgcctgagacaagctcagtttttgtgaacaagacaatggggattaaggaatgtggtgatatgtgtcataggaattgttcttgtactggttatgctaat |
2685385 |
T |
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| Q |
618 |
gtttatgtgactaatggtggaagtggttgtgttatgtggattggtgaacttaatgatattagagattatcctgatg |
693 |
Q |
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| T |
2685384 |
gtttatgtgactaatggtggaagtggttgtgttatgtggattggtgaacttaatgatattagagattatcctgatg |
2685309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 9e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 294 - 690
Target Start/End: Original strand, 36361365 - 36361761
Alignment:
| Q |
294 |
tggacaaatttttggtatgcaccaaaagatcaatgtgatagttacagagaatgtggtccttatggtttatgtgacacaaatgcttcacctgtttgtcaat |
393 |
Q |
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|||||||| |||||||||||||||||||| |||||||||| ||||| ||| |||||||| | |||| | ||||||||||||||||||||||||||| | | |
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| T |
36361365 |
tggacaaaattttggtatgcaccaaaagaccaatgtgataattacaaagagtgtggtccatttggtgtgtgtgacacaaatgcttcacctgtttgtaatt |
36361464 |
T |
|
| Q |
394 |
gtgtgaaaggttttagtcctaagaatgaacaagcttggaaattgagagatgggtctgatgggtgtgtgaggaataagaatttggattgtgagagtgataa |
493 |
Q |
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| T |
36361465 |
gtattaaagggtttcgaccaaagaatcatcaagcatggaatttgagagatggatctgatggatgtttgaggaataatgagttggattgtgagagtgataa |
36361564 |
T |
|
| Q |
494 |
atttttacgtatggagaatgtgaagttgcctgagacaagctcagtttttgtgaacaagacaatgggaattaaggaatgtggtgatatgtgtcataggaat |
593 |
Q |
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| T |
36361565 |
gtttttgcatatggtgaatgtgaagttaccagagacaagtagtgtttttgtgaataggagtatgagtttggttgaatgtggtgatttgtgtaaaaggaat |
36361664 |
T |
|
| Q |
594 |
tgttcttgtactggttatgctaatgtttatgtgactaatggtggaagtggttgtgttatgtggattggtgaacttaatgatattagagattatcctg |
690 |
Q |
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|||||||||||||||||||| ||| || | | | ||||||||| |||||||||||||||| ||| |||||||| |||||||||| |||||||| |
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| T |
36361665 |
tgttcttgtactggttatgcaaatattgagattgttgatggtggaattggttgtgttatgtggcttgatgaacttattgatattagaatttatcctg |
36361761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 36361162 - 36361228
Alignment:
| Q |
91 |
gaagtggaccatggaatggtgaaaggtttagtggtgtaccagagatgcaacatgatacagattcaat |
157 |
Q |
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|||||||||||||||||||| |||| || |||||||||||||||||||||| | |||||||||||| |
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| T |
36361162 |
gaagtggaccatggaatggtaaaagattcagtggtgtaccagagatgcaaccagttacagattcaat |
36361228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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