View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6221_high_10 (Length: 454)
Name: NF6221_high_10
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 91 - 432
Target Start/End: Original strand, 11437198 - 11437538
Alignment:
| Q |
91 |
ttcagtggtctttctagcatgccaaatgacgaatcaaaatacctaccaacataaagtgaagnnnnnnn-ggttgtatagaacatgctaattgtacatatg |
189 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
11437198 |
ttcagtggtctttctaccatgccaaatgactaatcaaaatacctaccaacataaagtgaagaaaaaaaaggttgtatagaacatgctaa--gtacatatg |
11437295 |
T |
|
| Q |
190 |
aacacgaatttgaacattcagtgataatctctnnnnnnnnnnnnnntcagtcataactcacatggaactattcattcacgtcttaagcatatttattaag |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11437296 |
aacacgaatttgaacattcagtgataatctctaaaaaatgaaaaaatcagtcataactcacatggaactattcattcacgtcttaagcatatttattaag |
11437395 |
T |
|
| Q |
290 |
gcactaaacaaaaaagtaaagaaaagacatggttaatattgaagaagcctcattgaacaaaaggaatagaacagtgtcccaaagaggaatacgaatcata |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11437396 |
gcactaaacaaaaaagtaaagaaaagacatggttcatattgaagaagcctcattgaacaaaaggaacagaacagtgtcccaaagaggaatacgaatcata |
11437495 |
T |
|
| Q |
390 |
tgaagattttctaacttacaatcagaaacaatgaagttgctgc |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11437496 |
tgaagattttctaacttacaatcagaaacaatgaagttgctgc |
11437538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 11437026 - 11437098
Alignment:
| Q |
1 |
aagtaatagtttaaacttaatgtagcataaagcatctcctattgcataatctagtttgcctccaaaaacatca |
73 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11437026 |
aagtaatagtctaaacttaatgtagcataaagcatctcctattgcataatctagtttgcctccaaaaacatca |
11437098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 432
Target Start/End: Original strand, 36095064 - 36095106
Alignment:
| Q |
390 |
tgaagattttctaacttacaatcagaaacaatgaagttgctgc |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36095064 |
tgaagattttctaacttacaatcagaaacaatgaagttgctgc |
36095106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University