View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6221_high_16 (Length: 369)
Name: NF6221_high_16
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 13902864 - 13903206
Alignment:
| Q |
1 |
aaattaccagcaagccaatgatgaggaagcgaagaatcataaaacaacttcacaataatcttctccaataaatcaacagcttttgaagtgaaaccattac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13902864 |
aaattaccagcaagccaatgatgaggaagcgaagaatcataaaacaacttcacaataatcttctccaataaatcaacagcttttgaagtgaaaccattac |
13902963 |
T |
|
| Q |
101 |
tgggttttggttccactttcacaattcctcctcctattttctcagactccannnnnnncagtttgtgttagaaattgttgagatttacgtaaataaatgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13902964 |
tgggttttggttccactttcacaattcctcctcctattttctcagactccatttttttcagtttgtgttagaaattgttgagatttacgtaaataaatgg |
13903063 |
T |
|
| Q |
201 |
aggatttgtttgtgataagtgatgatgaatgtggaaatgttgtgttttgtatggtttaacttccatggtggcatagctggcctagcaactgccacgtaag |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13903064 |
aggatttgtt-------------------tgtggaaatgttgtgttttgtatggtttaacttccatagtggcatagctggcctagcaactgccacgtaag |
13903144 |
T |
|
| Q |
301 |
tatcaagattctaacctgtgcattgaaatgtcctcctctttgtgctttcttgtcattctctg |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13903145 |
tatcaagattctaacctgtgcattgaaatgtcctcctctttgtgctttcttgtcattctctg |
13903206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 13872631 - 13872764
Alignment:
| Q |
1 |
aaattaccagcaagccaatgatgaggaagcgaagaatcataaaacaacttcacaataatcttctccaataaatcaacagcttttgaagtgaaaccattac |
100 |
Q |
| |
|
||||||||||||| ||| ||||||| ||| |||||||||||||| |||||||||| || |||||||| ||||||||||||||||||||||||| || | |
|
|
| T |
13872631 |
aaattaccagcaatccagtgatgagaaagtgaagaatcataaaagaacttcacaacaagattctccaacaaatcaacagcttttgaagtgaaacattttc |
13872730 |
T |
|
| Q |
101 |
tgggttttggttccactttcacaattcctcctcc |
134 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||| |
|
|
| T |
13872731 |
ttggttttggttccactttcacaatccctcctcc |
13872764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 13895099 - 13895228
Alignment:
| Q |
1 |
aaattaccagcaagccaatgatgaggaagcgaagaatcataaaacaacttcacaataatcttctccaataaatcaacagcttttgaagtgaaaccattac |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||||||||||||||||||| | || ||||||||| |||||||||||||||||| |||||| || | |
|
|
| T |
13895099 |
aaattaccggcaagccaatgatgaggaagtgatgaatcataaaacaacttcaccacaagcttctccaacaaatcaacagcttttgaactgaaacattttc |
13895198 |
T |
|
| Q |
101 |
tgggttttggttccactttcacaattcctc |
130 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |
|
|
| T |
13895199 |
ttggttttggttccactttcacaatccctc |
13895228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 13853780 - 13853909
Alignment:
| Q |
1 |
aaattaccagcaagccaatgatgaggaagcgaagaatcataaaacaacttcacaataatcttctccaataaatcaacagcttttgaagtgaaaccattac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||| || ||||||| || ||| ||||| || ||||||||||||||| |||||| || | |
|
|
| T |
13853780 |
aaattaccagcaagccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttttccaacaagtcaacagcttttgaactgaaacattttc |
13853879 |
T |
|
| Q |
101 |
tgggttttggttccactttcacaattcctc |
130 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |
|
|
| T |
13853880 |
ttggttttggttccactttcacaatccctc |
13853909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University