View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6221_high_2 (Length: 671)

Name: NF6221_high_2
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6221_high_2
NF6221_high_2
[»] chr4 (1 HSPs)
chr4 (1-654)||(32667349-32668006)


Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Complemental strand, 32668006 - 32667349
Alignment:
Q  1 ataatgtaatataatgggtttaaaatgtacaatgagatgaaattgattcgcatctttagtggaataacgcgtacactcataagtttgactaaaacccaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32668006 ataatgtaatataatgggtttaaaatgtacaatgagatgaaattgattcgcatctttagtggaataacgcgtacactcataagtttgactaaaacccaat 32667907  T
Q  101 tggttctccccaaaattattacacaacaacattttgtaccaaccttatagctaagtcgtttgtcactaacaacaaaattttccaccccaattctcacgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32667906 tggttctccccaaaattattacacaacaacattttgtaccaaccttatagctaagtcgtttgtcactaacaacaaaattttccaccccaattctcacgtt 32667807  T
Q  201 tccttcaataaatacaatccacaagcacacaaatttgaaacttccatgttataatgcaaattagcctcttgtacatattctactcatatatttaacaata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  32667806 tccttcaataaatacaatccacaagcacacaaatttgaaacttccatgctacaatgcaaattagcctcttgtacattatctactcatatatttaacaata 32667707  T
Q  301 tattcctatttccttcattagcaattagccatagcacaaaattataagccagtccatgggctgcacatttagtgtataaatnnnnnnnttatttacgatc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| ||||    
T  32667706 tattcctatttccttcattagcaattagccatagcacaaaattataagccagtccatgggctgcacatttagtgtataaataaaaaaattatttatgatc 32667607  T
Q  401 gtgatcagagcgctaccacttgacatgtaactacaattg----aggttgtatcaatcatatttgaccgtgattttcttttgtgcgaagaatcatgacacg 496  Q
    |||||||||||||| |||||||||||||||| |||||||    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32667606 gtgatcagagcgctgccacttgacatgtaaccacaattgaggtaggttgtatcaaccatatttgaccgtgattttcttttgtgcgaagaatcatgacacg 32667507  T
Q  497 aaaattatcatcaccgcgaccacaatttagcacataacttattgaaagtgtgcagctagcaatatcaagtttcaaaatcagaaaatggcaagaggattga 596  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32667506 aaaactatcataaccgcgaccacaatttagcacataacttattgaaagtgtgcagctagcaatatcaagtttcaaaatcagaaaatggcaagaggattga 32667407  T
Q  597 aggttctatcagcccttgactcagcaaaaacacaatactaccatttcaaggccatcat 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32667406 aggttctatcagcccttgactcagcaaaaacacaatactaccatttcaaggccatcat 32667349  T

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