View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_high_25 (Length: 290)
Name: NF6221_high_25
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 4816047 - 4816309
Alignment:
| Q |
10 |
catcatcaaaatgggggagattgttgaaccaagacggattttataaatatctctaaggtttgatggtattaatgtatagaagaacaattgactactttaa |
109 |
Q |
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| T |
4816047 |
catcatcaaaatgggggagattgttgaaccaagacgggttttataaatatctctaaggtttgatgatattaatgtatagaagaacaattgactactttaa |
4816146 |
T |
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| Q |
110 |
agtttgttcaattgggtaggactatagaattaaaatttgactctaaagttaacattctggccttgaaagtcaatgatctaaacaaagaagaagaactttg |
209 |
Q |
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| T |
4816147 |
agtttgttcaattgggtaggactatagaattaaaatttgactctaaagttaacattctggccttgaaagtcaatgatctaaacaaagaagaagaactttg |
4816246 |
T |
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| Q |
210 |
atggtcaagagaagctctaaatgagtattcatcatgttgtgaagaagacgctataatatcaag |
272 |
Q |
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| T |
4816247 |
atggtcaagagaagctctaaatgagtattcatcatgttgtgaagaagacgctataatatcaag |
4816309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 5223477 - 5223625
Alignment:
| Q |
80 |
aatgtatagaagaacaattgac-tactttaaagtttgttcaattgggtaggactatagaattaaaatttgactctaaagttaacattctggccttgaaag |
178 |
Q |
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| T |
5223477 |
aatgtatagaagaacaattggggtactatcaagtttatttaagtatgtatgaccatataattaaaatatgactctaaagtcaacattctgaccctgaaaa |
5223576 |
T |
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| Q |
179 |
tcaatgatctaaacaaagaagaagaactttgatggtcaagagaagctct |
227 |
Q |
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| T |
5223577 |
ccaacaatctaaacaaagaagaacaactctgatattcaagagaaactct |
5223625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 3552732 - 3552827
Alignment:
| Q |
82 |
tgtatagaagaacaattgactactttaaagtttgttcaattgggtaggactatagaattaaaatttgactctaaagttaacattctggccttgaaa |
177 |
Q |
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| T |
3552732 |
tgtattgaagaataattgattactctaaagtttgttcaaatgtacaggactatagaattaaaatctgaccctgaagtcaacactttgaccttgaaa |
3552827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 7681499 - 7681617
Alignment:
| Q |
30 |
ttgttgaaccaagacggattttataa--atatctctaaggttt-gatggtattaatgtatagaagaacaattgactactttaaagtttgttcaattgggt |
126 |
Q |
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| T |
7681499 |
ttgttgaaccaagatgggttttagaacaatatctctaaggttttgatgataacaatgtatagaagaacaactgggtactcaaaattttgttcaagtatgt |
7681598 |
T |
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| Q |
127 |
aggactatagaattaaaat |
145 |
Q |
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| T |
7681599 |
aggaccatataattaaaat |
7681617 |
T |
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