View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_high_27 (Length: 285)
Name: NF6221_high_27
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 14744986 - 14745254
Alignment:
| Q |
1 |
gattgatatccctgtgctcgaatatcatttgtaacattatacactgtgaagtgcaaatatatgtgcttgatttatctgacaaaatttgcttggatggctg |
100 |
Q |
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| T |
14744986 |
gattgatatccctgtgctcgaatatcatttgtaacattatacattgtgaagtgcaaatat--gtgcttgatttatctgacaaaatttccttggatggctg |
14745083 |
T |
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| Q |
101 |
tttgttgttgtgcctcaagtgaagtttccacaatattatcagtgtcttggtgcagaacttgtgctatcttaggggcaacctccaaaatggcttgcttttc |
200 |
Q |
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| T |
14745084 |
tttgttgttgtgcctcaagtgaagtttccacaatattatcagtgtcttggtgcagaagttgtgctatcttaggggcaacctccaaaatggcttgcttttc |
14745183 |
T |
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| Q |
201 |
aagtgaggtagactagactgcagttac----catattggatgagaaagcaaaactcttgaaccatcatttt |
267 |
Q |
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| T |
14745184 |
aagtgaggtagactagactacagttaccatgcatattgcatgagaaagcaaaactcttgaaccatcatttt |
14745254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 17582350 - 17582163
Alignment:
| Q |
1 |
gattgatatccctgtgctcgaatatcatttgtaacattatacactgtgaagtgcaaatatatgtgcttgatttatctgacaaaatttgcttggatggctg |
100 |
Q |
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| T |
17582350 |
gattgatatccctgtgctcgaatatcatttgtaacattatacattgtgaagtgcaaatat--gtgcttgatttatctgacaaaatttgcttggatggctg |
17582253 |
T |
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| Q |
101 |
tttgttgttgtgcctcaagtgaagtttccacaatattatcagtgtcttggtgcagaacttgtgctatcttaggggcaacctccaaaatgg |
190 |
Q |
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| T |
17582252 |
tttgttgttgtgcctcaagtgaagtttccacaatattatcagtgtcttggtgcagaacttgtgctatcttaggggcaacctccaaaatgg |
17582163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 17582161 - 17582113
Alignment:
| Q |
219 |
tgcagttaccatattggatgagaaagcaaaactcttgaaccatcatttt |
267 |
Q |
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| T |
17582161 |
tgcagttaccatattggatgagaaagcaaaactcttgaactatcatttt |
17582113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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