View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6221_high_28 (Length: 283)

Name: NF6221_high_28
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6221_high_28
NF6221_high_28
[»] chr7 (3 HSPs)
chr7 (52-271)||(14743943-14744161)
chr7 (52-269)||(14737426-14737639)
chr7 (1-51)||(14744374-14744424)
[»] chr5 (3 HSPs)
chr5 (52-218)||(17583149-17583315)
chr5 (52-269)||(17589144-17589359)
chr5 (1-51)||(17582896-17582946)
[»] chr3 (4 HSPs)
chr3 (57-126)||(27521856-27521924)
chr3 (57-126)||(27522746-27522814)
chr3 (55-89)||(23688166-23688200)
chr3 (55-89)||(24060403-24060437)
[»] chr8 (3 HSPs)
chr8 (55-115)||(23237993-23238052)
chr8 (60-126)||(35066149-35066214)
chr8 (153-193)||(4438288-4438328)
[»] chr1 (1 HSPs)
chr1 (64-124)||(10057655-10057714)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 52 - 271
Target Start/End: Complemental strand, 14744161 - 14743943
Alignment:
Q  52 aaatcaacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttcttagaaggggccaaatctttttgaacg 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14744161 aaatcaacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttcttagaaggggccaaatctttttgaac- 14744063  T
Q  152 aatgacaccaacaatacaacattcttataaaataatttgtttcaatggtataactggaagtaaacaaatcaccccaaaaccacgtattccttttatacat 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||||||   |||||||||||||||    
T  14744062 aatgacaccaacaatacaacattcttataaaataatttgtttcaagggtataacggaaagtaaacaagtcaccccaaaaccatccattccttttatacat 14743963  T
Q  252 aactagcgtcccacaggttc 271  Q
    ||||||||||||| ||||||    
T  14743962 aactagcgtcccataggttc 14743943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 52 - 269
Target Start/End: Complemental strand, 14737639 - 14737426
Alignment:
Q  52 aaatcaacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttcttagaaggggccaaatctttttgaacg 151  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| || ||||||||||   | |||||||||| ||||||||||| ||  |||||    
T  14737639 aaatcaacaaactcaatccctacaacactcgatccaaaggtgaacccaatgg-tggttgagcagagccttttcttagagggggccaaatcgtt--gaacg 14737543  T
Q  152 aatgacaccaacaatacaacattcttataaaataatttgtttcaatggtataactggaagtaaacaaatcaccccaaaaccacgtattccttttatacat 251  Q
     ||||||||||||||| |||||| ||||| |  ||||||||||||||||||||||| |||| ||||| ||| | |||||| || |||| | |||||| ||    
T  14737542 tatgacaccaacaataaaacattattatagacaaatttgtttcaatggtataactgtaagtgaacaagtca-ctcaaaacaacatatttcctttatatat 14737444  T
Q  252 aactagcgtcccacaggt 269  Q
    |||||| |||||||||||    
T  14737443 aactagtgtcccacaggt 14737426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14744424 - 14744374
Alignment:
Q  1 aaagtcgatgtagcacccttttgctcttgttactcctctcctcaaatgtgt 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14744424 aaagtcgatgtagcacccttttgctcttgttactcctctcctcaaatgtgt 14744374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 52 - 218
Target Start/End: Original strand, 17583149 - 17583315
Alignment:
Q  52 aaatcaacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttcttagaaggggccaaatctttttgaacg 151  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17583149 aaatcaaccaactcaattcccacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttcttagaaggggccaaatctttttgaacg 17583248  T
Q  152 aatgacaccaacaatacaacattcttataaaataatttgtttcaatggtataactggaagtaaacaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17583249 aatgacaccaacaatacaacattcttataaaataatttgtttcaagggtataactggaagtaaacaa 17583315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 52 - 269
Target Start/End: Original strand, 17589144 - 17589359
Alignment:
Q  52 aaatcaacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttcttagaaggggccaaatctttttgaacg 151  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| || ||||||||||   | |||||||||| ||||||||||| |||||||||    
T  17589144 aaatcaacaaactcaatccctacaacactcgatccaaaggtgaacccaatgg-tggttgagcagagccttttcttagagggggccaaatcgttttgaacg 17589242  T
Q  152 aatgacaccaacaatacaacattcttataaaataatttgtttcaatggtataactggaagtaaacaaatcaccccaaaaccacgtattccttttatacat 251  Q
     ||||||||||||||| |||||| ||||| |  ||||||||||||||||||||||| |||| ||||| ||| | |||||| || |||| | |||||| ||    
T  17589243 tatgacaccaacaataaaacattgttatagacaaatttgtttcaatggtataactgaaagtgaacaagtca-ctcaaaacaacatatttcctttatatat 17589341  T
Q  252 aactagcgtcccacaggt 269  Q
    |||||| |||||||||||    
T  17589342 aactagtgtcccacaggt 17589359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17582896 - 17582946
Alignment:
Q  1 aaagtcgatgtagcacccttttgctcttgttactcctctcctcaaatgtgt 51  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  17582896 aaagtcgatgtagcgcccttttgctcttattactcctctcctcaaatgtgt 17582946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 27521856 - 27521924
Alignment:
Q  57 aacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttctt 126  Q
    |||||||||||||||||||||||||||||||||  | |||||||| || |||||||||| || |||||||    
T  27521856 aacaaactcaattcctacaacactcgatccaaagataaacccaaa-ggcggttgagcaacaccttttctt 27521924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 27522746 - 27522814
Alignment:
Q  57 aacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttctt 126  Q
    |||||||||||||||||||||||||||||||||  | |||||||| || |||||||||| || |||||||    
T  27522746 aacaaactcaattcctacaacactcgatccaaagataaacccaaa-ggcggttgagcaacaccttttctt 27522814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 23688166 - 23688200
Alignment:
Q  55 tcaacaaactcaattcctacaacactcgatccaaa 89  Q
    |||||||| ||||||||||||||||||||||||||    
T  23688166 tcaacaaattcaattcctacaacactcgatccaaa 23688200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 24060403 - 24060437
Alignment:
Q  55 tcaacaaactcaattcctacaacactcgatccaaa 89  Q
    |||||||| ||||||||||||||||||||||||||    
T  24060403 tcaacaaattcaattcctacaacactcgatccaaa 24060437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 23237993 - 23238052
Alignment:
Q  55 tcaacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaa 115  Q
    |||||||| |||||| |||||||||| |||| |||||||||| ||| ||||||||||||||    
T  23237993 tcaacaaattcaattactacaacactagatctaaacgtgaacacaa-gggtggttgagcaa 23238052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 35066214 - 35066149
Alignment:
Q  60 aaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttctt 126  Q
    |||||||||||||||||||||||||||||   ||||||| ||||  |||||||||| || |||||||    
T  35066214 aaactcaattcctacaacactcgatccaagaatgaaccc-aaggacggttgagcaacaccttttctt 35066149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 4438328 - 4438288
Alignment:
Q  153 atgacaccaacaatacaacattcttataaaataatttgttt 193  Q
    ||||||||||||||| |||||| |||||||| |||||||||    
T  4438328 atgacaccaacaatataacattattataaaaaaatttgttt 4438288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 10057714 - 10057655
Alignment:
Q  64 tcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttc 124  Q
    |||||||||| |||||||| | |||| ||||||||||| ||||||||||||| || |||||    
T  10057714 tcaattcctataacactcgtttcaaaggtgaacccaaa-ggtggttgagcaacactttttc 10057655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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