View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6221_high_30 (Length: 277)
Name: NF6221_high_30
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_high_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 51112900 - 51112647
Alignment:
| Q |
17 |
cagcaccaccactgataaagcctctgaatatgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112900 |
cagcaccaccactgataaagcctctgaatatgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgct |
51112801 |
T |
|
| Q |
117 |
caaaaagccagtgaccatgcccatgatgctgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112800 |
caaaaagccagtgaccatgcccatgatgctgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctg |
51112701 |
T |
|
| Q |
217 |
aaaagaccaaacattatgctgctgacgaaagctatgcagatgatgatgatgatg |
270 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112700 |
agaagaccaaacattatgctgctgacgaaagctatgcagatgatgatgatgatg |
51112647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University