View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_high_37 (Length: 238)
Name: NF6221_high_37
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 798647 - 798863
Alignment:
| Q |
1 |
tgatggagcagcaatggcgaatagtgtaagttagaatcctcagattgaatcctcatattgatgatnnnnnnnctcctgcttgaggagaaacatacctaaa |
100 |
Q |
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| T |
798647 |
tgatggagcagcaatggcgaatagtgtaagttagaatcctca-------------tattgatgataaaaaaacttctgcttgaggagaaacatacctaaa |
798733 |
T |
|
| Q |
101 |
tggtgtgtatagtgcaagttagaatcttcatattgaatgaaaaagtaatggggagcatgcgcagattgtgtgctgaatatgagttagaattttcacattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| |||| ||||| |
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| T |
798734 |
tggtgtgtatagtgcaagttagaatcttcatattgaatgaaaaagtaatggggagcatgcgtagattgtgtgctaagtatgagttagaaatttcgcattg |
798833 |
T |
|
| Q |
201 |
aatggttgatcttggctcgagatgatgatg |
230 |
Q |
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||| ||||||||||||||||||||||||| |
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| T |
798834 |
aattattgatcttggctcgagatgatgatg |
798863 |
T |
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