View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6221_high_9 (Length: 462)

Name: NF6221_high_9
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6221_high_9
NF6221_high_9
[»] chr5 (2 HSPs)
chr5 (31-450)||(15674194-15674613)
chr5 (107-153)||(35670590-35670636)
[»] chr2 (2 HSPs)
chr2 (253-309)||(37893807-37893862)
chr2 (103-153)||(8756458-8756508)
[»] scaffold0148 (1 HSPs)
scaffold0148 (173-240)||(33922-33989)
[»] chr7 (1 HSPs)
chr7 (173-223)||(3761150-3761200)
[»] chr8 (5 HSPs)
chr8 (172-240)||(13634241-13634308)
chr8 (172-240)||(13734653-13734721)
chr8 (173-231)||(7493716-7493774)
chr8 (174-232)||(14402540-14402598)
chr8 (171-237)||(21138337-21138403)
[»] scaffold0363 (1 HSPs)
scaffold0363 (174-232)||(16255-16313)


Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 31 - 450
Target Start/End: Original strand, 15674194 - 15674613
Alignment:
Q  31 gctagtaagcaacaatatacgtaatcagtcaaaattcaataactgttagttttggatacaatgttccaatagtaacattactctaattcgacattacatt 130  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15674194 gctagcaagcaacaatatacgtaatcagtcaaaattcaataactgttagttttggatacaatgttccaataataacattactctaattcgacattacatt 15674293  T
Q  131 atcaatacacaaacgattcaaatgagtgagtattgttgacgggttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaa 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||    
T  15674294 atcaatacacaaacgattcaaatgagtgagtattgttgacgggttaaaagatacattacctgtttcttgacgccaaatgagtgtagaaattttctagcaa 15674393  T
Q  231 tcattcttcattcttcaatgatttgagacctagattttgcacaaaaaactttgaaatttgatgtttttagatggaagaggaaaaaagttgaagtgtgttg 330  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15674394 tcataattcattcttcaatgatttgagacctagattttgcacaaaaaactttgaaatttgaggtttttagatggaagaggaaaaaagttgaagtgtgttg 15674493  T
Q  331 ccattgtctagaaaatgttaggaacgacaatttactgcagttggcaaccgctaatgagccacaattaaccgctattgtgatctaaagacagttaactatc 430  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  15674494 ccatagtctagaaaatgttaggaacgacaatttactgcagttggcaacagctaacgagccacaagtaaccgctattgtgatctaaagacagttaactatc 15674593  T
Q  431 attgatggcattttgatatt 450  Q
    ||||||||||||||||||||    
T  15674594 attgatggcattttgatatt 15674613  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 35670636 - 35670590
Alignment:
Q  107 attactctaattcgacattacattatcaatacacaaacgattcaaat 153  Q
    ||||| ||||||| ||||||||||| |||||||||||||||| ||||    
T  35670636 attacactaattcaacattacattaacaatacacaaacgattgaaat 35670590  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 37893862 - 37893807
Alignment:
Q  253 ttgagacctagattttgcacaaaaaactttgaaatttgatgtttttagatggaagag 309  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  37893862 ttgagaccaagattttgcacaaaaaa-tttgaaatttggtgtttttagatggaagag 37893807  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 8756508 - 8756458
Alignment:
Q  103 taacattactctaattcgacattacattatcaatacacaaacgattcaaat 153  Q
    ||||||||| | |||||||||| |||||| |||||||||||| ||||||||    
T  8756508 taacattacaccaattcgacatgacattaacaatacacaaacaattcaaat 8756458  T

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Target: scaffold0148 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 33989 - 33922
Alignment:
Q  173 gttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatcattcttca 240  Q
    |||||||||| |||||||||||||| |||| |||||| ||||||||| ||| || |||||||| ||||    
T  33989 gttaaaagatgcattacctgtttcttgacgtcaaatgtgtgtagaaaccttttaacaatcattattca 33922  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 3761200 - 3761150
Alignment:
Q  173 gttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatctt 223  Q
    |||||||||| |||||||||||||| |||| |||||| |||||||||||||    
T  3761200 gttaaaagatgcattacctgtttcttgacgtcaaatgtgtgtagaaatctt 3761150  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 13634308 - 13634241
Alignment:
Q  172 ggttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatcattcttca 240  Q
    ||||||||||| |||||| | ||||| |||  |||||||||||||||| ||| ||||||||||||||||    
T  13634308 ggttaaaagatgcattacatatttcttgacatcaaatgagtgtagaaa-cttttagcaatcattcttca 13634241  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 13734721 - 13734653
Alignment:
Q  172 ggttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatcattcttca 240  Q
    ||||||||||| |||||| | ||||| |||  ||||||||||||||||  || ||||||||||||||||    
T  13734721 ggttaaaagatgcattacatatttcttgacatcaaatgagtgtagaaactttctagcaatcattcttca 13734653  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 7493774 - 7493716
Alignment:
Q  173 gttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaat 231  Q
    |||||||||| ||||||  |||||| ||||  ||||||||||||||||||| |||||||    
T  7493774 gttaaaagatgcattacacgtttcttgacgttaaatgagtgtagaaatcttttagcaat 7493716  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 14402540 - 14402598
Alignment:
Q  174 ttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatc 232  Q
    |||||||||||| ||| ||||||| |||| |||||| ||||||||||| | ||||||||    
T  14402540 ttaaaagatacactacatgtttcttgacgtcaaatgtgtgtagaaatcatctagcaatc 14402598  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 21138403 - 21138337
Alignment:
Q  171 gggttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatcattct 237  Q
    |||||||||||| |||||| ||||||| || | |||||| ||||||||| ||| |||||||| ||||    
T  21138403 gggttaaaagatgcattacttgtttcttgatgtcaaatgtgtgtagaaaccttctagcaatctttct 21138337  T

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Target: scaffold0363 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 16313 - 16255
Alignment:
Q  174 ttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatc 232  Q
    |||||||||||| ||| ||||||| |||| |||||| ||||||||||| | ||||||||    
T  16313 ttaaaagatacactacatgtttcttgacgtcaaatgtgtgtagaaatcatctagcaatc 16255  T

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