View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6221_low_12 (Length: 425)
Name: NF6221_low_12
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 73 - 415
Target Start/End: Complemental strand, 32131509 - 32131167
Alignment:
| Q |
73 |
cagagaaatattaacaggttctagttttcatgaggaattccgtcaggattgatttattgatttgattctttcttggtaagtgatttagatgaatattcat |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32131509 |
cagagaaatattaacaggttctagttttcatgaggaattccgtcaggattgatttattgatttgattctttcttggtaagtgatttagatgaatattcat |
32131410 |
T |
|
| Q |
173 |
tactaactataaacttgccacattatcaactgactataaactttctccatttctacctataaacttgctgtgtcgttaaaccaacactcctctaagcatc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32131409 |
tactaactataaacttgccacattatcaactgactataaactttctccatttctacctataaacttgctgtgtcgttaaaccaacactcctctaagcatc |
32131310 |
T |
|
| Q |
273 |
tcatcacacttgccacattatcaattaactctcatccacctcaacacatttcttcctttcagtttagactttcatacaaactagcttatttgagctccca |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32131309 |
tcatcacacttgccacattatcaattaactcttatccacctcaacacatttcttcctttcagtttagactttcatacaaactagcttatttgagctccca |
32131210 |
T |
|
| Q |
373 |
acctaaacctgatcaactcctcattggggttggaggacctatg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32131209 |
acctaaacctgatcaactcctcattggggttggaggacctatg |
32131167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32131571 - 32131530
Alignment:
| Q |
1 |
atgagttccttccaagtaacctcatcccatggcattgccctt |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32131571 |
atgagttccttccaagtaacctcatcccatggcattgccctt |
32131530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University