View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6221_low_13 (Length: 425)
Name: NF6221_low_13
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_low_13 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Complemental strand, 4841409 - 4841011
Alignment:
| Q |
17 |
acaaagctcctacagctatttccttcaatgctagtttgttgattcgacatccatggattggaaattcgttgaaatatctacaatttgaagtggagtttag |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
4841409 |
acaaagctccaacagctatttccttcaatgctagtttgttgattcgacatccatggattggaaattcgttgaaaaatctacaatttgaagtggagtttag |
4841310 |
T |
|
| Q |
117 |
aacaaagcacaatgaatacttttacaagggtaaagttctagagattatgactggattggatttatcatgcaataagctaacaggtgtcatcccttctcac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |
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|
| T |
4841309 |
aacaaagcacaatgaatacttttacaagggtaaagttctagagattatgactggattggatttatcatgcaataatttaacaggtgttatcccttcccaa |
4841210 |
T |
|
| Q |
217 |
gttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtcctattccaattactttttcaaatcttacccaaatagagagtc |
316 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
4841209 |
attggagacctacaacaaattagagccttgaatctatcacataatcacttgtcaggtcccattccaatcactttttcaaatcttacccaaatagagagtc |
4841110 |
T |
|
| Q |
317 |
ttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaattttttagaaatcttcaatgtgtcatacaacaacctctctg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4841109 |
ttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaactttttagaaatcttcaatgtgtcatacaacaacctctctg |
4841011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 415
Target Start/End: Original strand, 5174114 - 5174511
Alignment:
| Q |
21 |
agctcctacagctatttccttcaatgctagtttgttgattcgacatccatggattggaaattcgttgaaatat---ctacaatttgaagtggagtttaga |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |
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|
| T |
5174114 |
agctcctacagatatttccttcaatgctagtttgttgattcgacatccatggattggaaattcgttgaaagaagaactacaatttgaagtggagttcaga |
5174213 |
T |
|
| Q |
118 |
acaaagcacaatgaatacttttacaagggtaaagttctagagattatgactggattggatttatcatgcaataagctaacaggtgtcatcccttctcacg |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5174214 |
acaaagcacaatgaatactcttacaagggtatagttctagagaatatgactggattggatttatcatgcaataagctaacaggtgtcatcccttctcaaa |
5174313 |
T |
|
| Q |
218 |
ttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtcctattccaattactttttcaaatcttacccaaatagagagtct |
317 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
5174314 |
ttggagacctacaacaaattagagccttgaatctatcacataatcacttgtctggtcccattccaatcactttttcaaatcttacccaaatagagagtct |
5174413 |
T |
|
| Q |
318 |
tgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaattttttagaaatcttcaatgtgtcatacaacaacctctctg |
415 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||| | || ||||| || |||||||||||||||||||||||| |||| |
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|
| T |
5174414 |
tgacttatcatacaatgacttgagtggtaagatacccaatgaactaacccagctaaactttttgtcaaccttcaatgtgtcatacaacaacctttctg |
5174511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 92 - 415
Target Start/End: Original strand, 5183530 - 5183853
Alignment:
| Q |
92 |
atctacaatttgaagtggagtttagaacaaagcacaatgaatacttttacaagggtaaagttctagagattatgactggattggatttatcatgcaataa |
191 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
5183530 |
atctagaatttgaagtgcagtttagaacaaagcactatgattacttttacaagggtatagttctaaagatcatgactggattggatttatcatgcaataa |
5183629 |
T |
|
| Q |
192 |
gctaacaggtgtcatcccttctcacgttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtcctattccaattactttt |
291 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
5183630 |
gctaacaggtgtcatcccttctcaaattggagacctacaacaaattaaagccttgaatctatcacataattacttgtctggtcctattccaataactttt |
5183729 |
T |
|
| Q |
292 |
tcaaatcttacccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaattttttagaaatcttca |
391 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| | |||||||||||||| |
|
|
| T |
5183730 |
tcaaaacttacccaaatagagagccttgacttatcatacaataacttgagtggtaagattccttatgaactaaccaagttgacctctttagaaatcttca |
5183829 |
T |
|
| Q |
392 |
atgtgtcatacaacaacctctctg |
415 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
5183830 |
atgtgtcatacaacaacctttctg |
5183853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 94 - 415
Target Start/End: Original strand, 5196931 - 5197252
Alignment:
| Q |
94 |
ctacaatttgaagtggagtttagaacaaagcacaatgaatacttttacaagggtaaagttctagagattatgactggattggatttatcatgcaataagc |
193 |
Q |
| |
|
||||| || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5196931 |
ctacatttggaagtggagttcagaacaaagcactatgaatacttttacaagggtaaagttctagagaatatgactggattggatttatcatgcaataagc |
5197030 |
T |
|
| Q |
194 |
taacaggtgtcatcccttctcacgttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtcctattccaattactttttc |
293 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
5197031 |
taacaggtgtcatcccttctcaaattggagacctacaacaaattagagccttgaatctatcacataatcacttgtcaggtcccattccaatcactttttc |
5197130 |
T |
|
| Q |
294 |
aaatcttacccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaattttttagaaatcttcaat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | || ||||| || ||||||| |
|
|
| T |
5197131 |
aaatcttacccaaatagagagtcttgacttatcatacaatgacttgagtggtaagatacccaatgaactaacccagctaaactttttgtcaaccttcaat |
5197230 |
T |
|
| Q |
394 |
gtgtcatacaacaacctctctg |
415 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
5197231 |
gtgtcatacaacaacctttctg |
5197252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 92 - 408
Target Start/End: Original strand, 5215074 - 5215390
Alignment:
| Q |
92 |
atctacaatttgaagtggagtttagaacaaagcacaatgaatacttttacaagggtaaagttctagagattatgactggattggatttatcatgcaataa |
191 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
5215074 |
atctacaatttgaggtggagttcagaacaaagcactatgaatacttttacaagggtaaagttctagagaatatgactggattggatttatcatggaataa |
5215173 |
T |
|
| Q |
192 |
gctaacaggtgtcatcccttctcacgttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtcctattccaattactttt |
291 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||| |||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5215174 |
cctaacaggtctcatcccttctcaaattggtcaccttcaacaagttagagccttgaacctatcacataatcacttgtctggtcctattccaattactttt |
5215273 |
T |
|
| Q |
292 |
tcaaatcttacccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaattttttagaaatcttca |
391 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| |
|
|
| T |
5215274 |
tcaaatcttacccaaatagagagccttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaactttttatcaaccttca |
5215373 |
T |
|
| Q |
392 |
atgtgtcatacaacaac |
408 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
5215374 |
atgtatcatacaacaac |
5215390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 92 - 415
Target Start/End: Complemental strand, 4855840 - 4855517
Alignment:
| Q |
92 |
atctacaatttgaagtggagtttagaacaaagcacaatgaatacttttacaagggtaaagttctagagattatgactggattggatttatcatgcaataa |
191 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
4855840 |
atctacaatttgaagtggagttcagaacaaagcactatgaatacttttacaagggtaaagttctagagaatatgactggattggatttatcatggaataa |
4855741 |
T |
|
| Q |
192 |
gctaacaggtgtcatcccttctcacgttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtcctattccaattactttt |
291 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| |||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4855740 |
cctaacaggtgtcatcccttctcaaattggtcaccttcaaccagttagagccttgaacctatcacataatcacttgtctggtcctattccaattactttt |
4855641 |
T |
|
| Q |
292 |
tcaaatcttacccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaattttttagaaatcttca |
391 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||| |||| |
|
|
| T |
4855640 |
tcaaatcttacccaaatagaaagccttgacttatcatacaataacttgagtggtaagataccttatgaactaaccaagttgacctctttagaaatattca |
4855541 |
T |
|
| Q |
392 |
atgtgtcatacaacaacctctctg |
415 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
4855540 |
atgtgtcatacaacaacctttctg |
4855517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 94 - 415
Target Start/End: Original strand, 5161249 - 5161570
Alignment:
| Q |
94 |
ctacaatttgaagtggagtttagaacaaagcacaatgaatacttttacaagggtaaagttctagagattatgactggattggatttatcatgcaataagc |
193 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
5161249 |
ctacacttggaagtggagttcagaacaaagcacaatgattacttttacaaaggtaaagtcctagagaaaatgactggattggatttatcatgcaacaagc |
5161348 |
T |
|
| Q |
194 |
taacaggtgtcatcccttctcacgttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtcctattccaattactttttc |
293 |
Q |
| |
|
|||||||| ||||||||||| |||| |||| |||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
5161349 |
taacaggtactatcccttctcaaattgggcacctgcaacaagttttagccttgaacctatcacataatcacttgtcgggtcctattccaattacgttttc |
5161448 |
T |
|
| Q |
294 |
aaatcttacccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaattttttagaaatcttcaat |
393 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||| || |||||| |
|
|
| T |
5161449 |
aaatcttaccgaaatagagagccttgacttatcatacaataacttgagtggtaagataccttatgagctaacccagttgacctttttatcaaccttcaac |
5161548 |
T |
|
| Q |
394 |
gtgtcatacaacaacctctctg |
415 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
5161549 |
gtgtcatacaacaacctttctg |
5161570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 110 - 415
Target Start/End: Original strand, 7143411 - 7143716
Alignment:
| Q |
110 |
agtttagaacaaagcacaatgaatacttttacaagggtaaagttctagagattatgactggattggatttatcatgcaataagctaacaggtgtcatccc |
209 |
Q |
| |
|
|||||||||||||| || |||| ||||||||| | | |||| | |||||||| |||||||||||||||||||||||||||| |||| | ||||| || |
|
|
| T |
7143411 |
agtttagaacaaagaactatgagtacttttacgacgctaaaatcctagagatgatgactggattggatttatcatgcaatatcgtaactagagtcatacc |
7143510 |
T |
|
| Q |
210 |
ttctcacgttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtcctattccaattactttttcaaatcttacccaaata |
309 |
Q |
| |
|
|||| | |||||||| | ||| | | || ||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
7143511 |
ttctgaacttggagacatgcaaaaccatcgagtcttgaatctataacataatcacttgtcaggtcctattccaatcactttttccaatcttacccaaata |
7143610 |
T |
|
| Q |
310 |
gagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaattttttagaaatcttcaatgtgtcatacaacaacc |
409 |
Q |
| |
|
|||||||||||||||||||| | |||||||| ||||||| || | | |||||| || |||| ||| |||| |||||||||||||| |||||||||| |
|
|
| T |
7143611 |
gagagtcttgacttatcatagagtaacttgaatggtaaggtagcttctcaactaagtcacttgacctttatagatatcttcaatgtgtcttacaacaacc |
7143710 |
T |
|
| Q |
410 |
tctctg |
415 |
Q |
| |
|
| |||| |
|
|
| T |
7143711 |
tttctg |
7143716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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