View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_low_15 (Length: 414)
Name: NF6221_low_15
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_low_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Complemental strand, 34397497 - 34397100
Alignment:
| Q |
17 |
acatctctataagataaaatctgagaagcacttactaaaagaagctgcttcttaagtatttcccaattccctcctctagcagcagcatgaatggccctat |
116 |
Q |
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| T |
34397497 |
acatctctataagataaaatctgagaagcacttactaaaagaagctgcttctttagtatttcccaattccctcctctagcagcagcatgaatggccctat |
34397398 |
T |
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| Q |
117 |
tcaatatctccctcttgaaaactccaccaccaacaccttcatccaattcaacaataccacaatcttttcctaagagagcaaaatcaagaatcatgttgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34397397 |
tcaatatctccctcttgaaaactccaccaccaacaccttcatccaattcaacaataccacaatcttttcctaagagagcaaaatcaagaatcatgttgaa |
34397298 |
T |
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| Q |
217 |
tacctcagaattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34397297 |
tacctcagaattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattca |
34397198 |
T |
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| Q |
317 |
taaacaaactccaaatcaccagcagaagcagcagtgtacaaaagccatccaccatatccaccacgaatgagagagtttgttcctgttgctgtttcttc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34397197 |
taaacaaactccaaatcaccagcagaagcagcagtgtacaaaagccatccaccatatccaccacgaatgagagagtttgttcctgtttctgtttcttc |
34397100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 218 - 376
Target Start/End: Original strand, 38831511 - 38831669
Alignment:
| Q |
218 |
acctcagaattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattcat |
317 |
Q |
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| T |
38831511 |
acctcagaacttttacttctagctgcagcatacaaaatatcagtaacaccatactcaccttctccaaaaacaagagaagattctctcctcaacaattcac |
38831610 |
T |
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| Q |
318 |
aaacaaactccaaatcaccagcagaagcagcagtgtacaaaagccatccaccatatcca |
376 |
Q |
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| T |
38831611 |
aaacaaattccatatcaccagctgaagcagcagtgtaaagaagccatccaccatatcca |
38831669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 38831382 - 38831418
Alignment:
| Q |
71 |
agtatttcccaattccctcctctagcagcagcatgaa |
107 |
Q |
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| T |
38831382 |
agtatctcccaattcccacctctagcagcagcatgaa |
38831418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 7997069 - 7997140
Alignment:
| Q |
225 |
aattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaag |
296 |
Q |
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| T |
7997069 |
aattcttgcttctagcagcagcataaagtatatcagtaacaccatattctccttcaccgaaaaccaacaaag |
7997140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 8021733 - 8021662
Alignment:
| Q |
225 |
aattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaag |
296 |
Q |
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| T |
8021733 |
aattcttgcttctagcagcagcataaagtatatcagtaacaccatattctccttcaccgaaaaccaacaaag |
8021662 |
T |
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