View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_low_16 (Length: 385)
Name: NF6221_low_16
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 23414695 - 23414498
Alignment:
| Q |
18 |
gttagattaatagagagaagtaagttcgagtttgctctatttttctacattcatttctaagatagatagacacaagttgaagattagtgaaactcaattt |
117 |
Q |
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| T |
23414695 |
gttagattaatagagagaagtaagttcgagtttgctctatttttctacattc-----taagatagatagacacaaattgaagatcactgaaactcaattt |
23414601 |
T |
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| Q |
118 |
agtaaatgaatcctactaattgataatactagtttttcatttgagtttctcaaagaggtcgacctatggacggttgcaccataaagccgactaatgataa |
217 |
Q |
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| T |
23414600 |
agtaaataaatcccactaattgatcatactagtttttgatttgagtttctcaaagaggtcgacctatagatggttgcaccataaagctgactaatgataa |
23414501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 23414349 - 23414271
Alignment:
| Q |
300 |
aaaaagctgtatgaacttagcc------gaaataatttattaaatttgtataggaatccatctttgcttggcacctttg |
372 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| |||| |
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| T |
23414349 |
aaaaagctgtatgaacttagcctaattggaaataatttattaaatttgtatgggaatccatctttgcttgacacttttg |
23414271 |
T |
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