View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6221_low_19 (Length: 327)

Name: NF6221_low_19
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6221_low_19
NF6221_low_19
[»] chr5 (1 HSPs)
chr5 (18-308)||(35091238-35091530)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 35091530 - 35091238
Alignment:
Q  18 ataatactagaatttaattattagtgatgtttgtcatattgctcttgagactcagcatgtctgaatgggacatcatatgatacaaattagtactccaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35091530 ataatactagaatttaattattagtgatgtttgtcatattgctcttgagacacagcatgtctgaatgggacatcatatgatacaaattagtactccaaaa 35091431  T
Q  118 gatagacatgatcactatcatacttaaaagataaag---agagnnnnnnnntacatcaaaagaagtccattccaaattcagatttaaggattgagacatt 214  Q
    ||||||||||||||||||||||||||||||||||||   |||         |||| ||||||||||||| ||||||||| | || |||||| ||||||||    
T  35091430 gatagacatgatcactatcatacttaaaagataaagagaagaaaaaaaaaatacaacaaaagaagtccactccaaattctg-ttaaaggatcgagacatt 35091332  T
Q  215 attgcagtttgctttaaggttcatgatgttcatgaaccaagtagcttcatgtcatcaacattacagtgcatgaataccaaaaacagctcctttg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35091331 attgcagtttgctttaaggttcatgatgttcatgaaccaagtagcttcatgtcatcaacattacagtgcatgaataccaaaaacagctcctttg 35091238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University