View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6221_low_25 (Length: 302)
Name: NF6221_low_25
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 75 - 287
Target Start/End: Complemental strand, 24581039 - 24580829
Alignment:
| Q |
75 |
tataaactcttgtaagaatgacacttatcaaacatgtcttttttaatcatacgaacatataatctataagctataagttataaactcaattttatatctt |
174 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| |||| |
|
|
| T |
24581039 |
tataaactcttgtaagaatgacacttaccaaacatatcttttttaatcatacgagcatataatctataagctataaatcataaactcaattttatgtctt |
24580940 |
T |
|
| Q |
175 |
ttaaaacaggtgcatgatcttttaggactccatcataaacactctataacttccccttnnnnnnnnncactataacttcctcagtttcattccgcctcat |
274 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
24580939 |
ttcaaacaggtgcatgatcttttaggactccatcataaaca--ctataacttccccttaaaaaaaaacactataccttcctcagtttcattccgcctcat |
24580842 |
T |
|
| Q |
275 |
ataactaacatat |
287 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24580841 |
ataactaacatat |
24580829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 47789565 - 47789651
Alignment:
| Q |
91 |
aatgacacttatcaaacatgtctttttt-aatcatacgaacatataatctata--agctataagttataaactcaattttatatctt |
174 |
Q |
| |
|
||||||||||| ||||||||| |||||| |||||||||| | ||||| ||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
47789565 |
aatgacacttaccaaacatgtttttttttaatcatacgagcttataagctatataagctataaactataaactcaattttatctctt |
47789651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 52831454 - 52831365
Alignment:
| Q |
85 |
tgtaagaatgacacttatcaaacatgtcttttttaatcatacgaacatataatctataagctataagttataaactcaattttatatctt |
174 |
Q |
| |
|
||||| |||||| ||| |||||| || ||||||||||||| || | ||||| |||||| ||||||| |||||||||| ||||| |||| |
|
|
| T |
52831454 |
tgtaaaaatgaccgttaccaaacaagttttttttaatcatatgagcttataagctataaactataagccataaactcaaatttatgtctt |
52831365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 21516737 - 21516797
Alignment:
| Q |
91 |
aatgacacttatcaaacatgtcttttttaatcatacgaacatataatctataagctataag |
151 |
Q |
| |
|
||||||| ||| ||||||||||||||||| |||||||| | ||||| |||||||| ||||| |
|
|
| T |
21516737 |
aatgacaattaccaaacatgtcttttttagtcatacgagcttataagctataagccataag |
21516797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 13565658 - 13565612
Alignment:
| Q |
95 |
acacttatcaaacatgtcttttttaatcatacgaacatataatctat |
141 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||| |||| |
|
|
| T |
13565658 |
acacttatcaaacatgtctttttttatcatgcgaacttataaactat |
13565612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 7274631 - 7274579
Alignment:
| Q |
99 |
ttatcaaacatgtcttttttaatcatacgaacatataatctataagctataag |
151 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| | ||||| |||| ||||||||| |
|
|
| T |
7274631 |
ttatgaaacaagtcttttttaatcatacgagcttataagctatgagctataag |
7274579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 37334504 - 37334453
Alignment:
| Q |
75 |
tataaactcttgtaagaatgacacttatcaaacatgtcttttttaatcatac |
126 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
37334504 |
tataaactcgtgtaaaaatgacagttatcaaaccggtcttttttaatcatac |
37334453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 28444843 - 28444912
Alignment:
| Q |
75 |
tataaactcttgtaagaatgacacttatcaaacatgtcttttttaatcatacgaacatataatctataag |
144 |
Q |
| |
|
||||| ||||||||| ||||| | ||| |||||| || |||||||||||||||| | ||||| ||||||| |
|
|
| T |
28444843 |
tataagctcttgtaaaaatgagagttaccaaacaggtattttttaatcatacgagcttataagctataag |
28444912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University