View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_low_28 (Length: 289)
Name: NF6221_low_28
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 26454999 - 26454729
Alignment:
| Q |
1 |
caactagcattaaaggaaaccctttaagttagatgagattatgggcaagttcatgaaatccacacaaaacaatcttaaggagctgaaggtgagccaagaa |
100 |
Q |
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| T |
26454999 |
caactagcattaaaggaaaccctttaagttagatgagattatgggcaagttcatgaaatccacacaaaacaatcttaaggagctgaaggtgagccaagaa |
26454900 |
T |
|
| Q |
101 |
acaactcaaacgaacaaagaagcttgtatcaagaatgagatacaaattggccatttgtcaaccaaaatcccggccactcctcatgaaggttttgtggatg |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454899 |
acaactcaaaagaacaaagaagcttgtatcaagaatgagatacaaattggccatttgtcaaccaaaatcccggccactcctcatgaaggttttgtggatg |
26454800 |
T |
|
| Q |
201 |
tgataatcccaagaatgagaaatgcaacatggtgaacgttgatgatgaaagtattgacataatgataattg |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454799 |
tgataatcccaagaatgagaaatgcaacatggtgaacgttgatgatgaaagtattgacataatgataattg |
26454729 |
T |
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