View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_low_3 (Length: 639)
Name: NF6221_low_3
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 8 - 621
Target Start/End: Complemental strand, 41918729 - 41918116
Alignment:
| Q |
8 |
tgagatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttat |
107 |
Q |
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| T |
41918729 |
tgagatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttat |
41918630 |
T |
|
| Q |
108 |
gttcatcattctcttcatgtttgttttcaacaacgagtaaattccatactcgtaatgtctcttcgtcaagcattacttcaacttctgctgatggtcgatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41918629 |
gttcatcattctcttcatgtttgttttcaacaacgagtaaattccatactcgtaatgtctcttcgtcaagcattacttcaacttctgctgatggtcgatt |
41918530 |
T |
|
| Q |
208 |
ataaagaactaattcccctgactttttgcggacgtctctcttatttttctttcgatgcannnnnnncttcaaggaaataattttcttgattaaagatctc |
307 |
Q |
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| T |
41918529 |
ataaagaactaattcccctgactttttgcggacatctctcttatttttctttcgatgcatttttttcttcaaggaaataattttcttgattaaagatctc |
41918430 |
T |
|
| Q |
308 |
atttttcggctggttgtagaatttccttccgcccaaaattgtgtccaacattttctcttcgtaacaaaactttttgatctcttgccctttgcaaacgggg |
407 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41918429 |
atttttcggctggttgtagaatttccttctgcccaaaattgtgtccaacattttctcttcgtaacaaaactttttgatctctggccctttgcaaacgggg |
41918330 |
T |
|
| Q |
408 |
gcaagagttttaccaaacttattctttctcttctaactcttttccttttacacattattggaaaattttgtccaattctcctactctcaactagacataa |
507 |
Q |
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| T |
41918329 |
gcaagagttttaccaaacttattctttctcttctaactcttttccttttacacattattggaaaattttgtccaattctcctactctcaactagacataa |
41918230 |
T |
|
| Q |
508 |
acctgacaatgaagacattttctgataactttgtaccgaattgtatacgatgccagattcattagttatagttgaattttcaaatccaccctgataaacc |
607 |
Q |
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| T |
41918229 |
acctgacaatgaagacattttctgataactttgtaccgaattgtatacgatgccagattcattagttatagttgaattttcaaatccaccctgataaacc |
41918130 |
T |
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| Q |
608 |
tttgaatctttgaa |
621 |
Q |
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|||||||||||||| |
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| T |
41918129 |
tttgaatctttgaa |
41918116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 11 - 596
Target Start/End: Complemental strand, 1687605 - 1687017
Alignment:
| Q |
11 |
gatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttatgtt |
110 |
Q |
| |
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|||||||||||||||||||| |||||||| || ||| |||||| ||| || ||| ||| |||||||||| ||||||||||||||||||||||| |
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| T |
1687605 |
gatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgtt |
1687506 |
T |
|
| Q |
111 |
catcattctcttcatgtttgttttcaacaacgagtaaattccatactcgtaatgtctcttcgtcaagcattacttcaacttctgctgatggtcgattata |
210 |
Q |
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|||| ||||| ||||||||||||||| ||||||| || |||||||| ||||||||||||||||||| | |||| | |||| |||| || | ||| |
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| T |
1687505 |
catctttctcatcatgtttgttttcagcaacgagcaagttccatacacgtaatgtctcttcgtcaaactttacattgactttcaacaatggccgttcata |
1687406 |
T |
|
| Q |
211 |
aagaactaattcccctgactttttgcggacgtctctcttatttttctttcgatgcannnnnnncttcaaggaaataattttcttgattaaagatctcatt |
310 |
Q |
| |
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|||||||||||| ||||| ||||| ||||| | |||||||||| ||||||||| | || |||||||||| |||||||||| || | ||||| |
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| T |
1687405 |
aagaactaattctcctgattttttacggacatttctcttatttgcctttcgatgtatttttttatttgaggaaataatcttcttgattatagttttcatt |
1687306 |
T |
|
| Q |
311 |
tttcggctggttgtag---aatttccttccgcccaaaattgtgtccaacattttctcttcgtaacaaaactttttgatctcttgccctttgcaaacgggg |
407 |
Q |
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||||||||| |||||| |||||||||| | | || | | |||||||||| |||||| ||| |||| |||||||||| | ||||||||||| ||| |
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| T |
1687305 |
tttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaagggt |
1687206 |
T |
|
| Q |
408 |
gcaagagttttaccaaacttattctttctcttctaactcttttccttttacacattattggaaaattttgtccaattctcctactctcaactagacataa |
507 |
Q |
| |
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|||||||||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||| |||||||| |
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| T |
1687205 |
tcaagagttttaccaaatttattctttctctttttactcttttcctcttacacattattggaaaatttcctccaattcttctattctcaacaagacataa |
1687106 |
T |
|
| Q |
508 |
acctgacaatgaagacattttctgataactttgtaccgaattgtatacgatgccagattcattagttatagttgaattttcaaatccac |
596 |
Q |
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| ||||||||||| |||||| || |||||||||| ||||||||| |||| ||||| |||||||||| |||||| | |||||||||| |
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| T |
1687105 |
agatgacaatgaagtcattttttggtaactttgtagtgaattgtattcgatagcagatacattagttatggttgaactctcaaatccac |
1687017 |
T |
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