View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_low_33 (Length: 272)
Name: NF6221_low_33
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 31320752 - 31320514
Alignment:
| Q |
18 |
gaaaccttctcactggacaagttcctcctgcttggggaaataatttagacgtgtgagctatctttctaatactacnnnnnnnn--------gatcaagct |
109 |
Q |
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| T |
31320752 |
gaaaccttctcactggacaagttcctcctgcttggggaaagaattcagacgtgtgagctatctttctaatactacttttttttttttttttgatcaagct |
31320653 |
T |
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| Q |
110 |
aaaaatg-aatataaaactcaggagctgcctgaaccacatacaatcaaacaatccaaactaagacaacaaaagagaacacccctgccaatggaggtacaa |
208 |
Q |
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| T |
31320652 |
taaaatggaatataaaactcaggagctgcctgaaccacatacaatcaaacaatccaaactaagacaacaaaa-agaacaccccttccaatggaggtacaa |
31320554 |
T |
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| Q |
209 |
agaccacatccaacaatggctaccac-taagactagctat |
247 |
Q |
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| T |
31320553 |
agaccacatccaacaatggctaccacgtaagactagctat |
31320514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 102 - 232
Target Start/End: Complemental strand, 9447357 - 9447225
Alignment:
| Q |
102 |
atcaagctaa-aaatg-aatataaaactcaggagctgcctgaaccacatacaatcaaacaatccaaactaagacaacaaaagagaacacccctgccaatg |
199 |
Q |
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| T |
9447357 |
atcaagctaagaaatgcaatataatactcaggagatgcctgaaccgcatacaaataaacaattcaaactaagacagcaaaagagaacacacctgccaatg |
9447258 |
T |
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| Q |
200 |
gaggtacaaagaccacatccaacaatggctacc |
232 |
Q |
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| T |
9447257 |
gaggtacaaagaccaaatccatcaatggctacc |
9447225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 31306284 - 31306219
Alignment:
| Q |
18 |
gaaaccttctcactggacaagttcctcctgcttggggaaataatttagacgtgtgagctatctttc |
83 |
Q |
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| T |
31306284 |
gaaaccttctcactggacaagttccttctgcttggggaaaggattcagacgtgtgagttatctttc |
31306219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 101 - 262
Target Start/End: Complemental strand, 31610443 - 31610280
Alignment:
| Q |
101 |
gatcaagctaa-aaatg-aatataaaactcaggagctgcctgaaccacatacaatcaaacaatccaaactaagacaacaaaagagaacacccctgccaat |
198 |
Q |
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| T |
31610443 |
gatcaagctaagaaatgcaatataaaactcaggagatgcctgaaccgcatacaatcaaacaatccaaactaagacaacaaaagagaacacacctgccaat |
31610344 |
T |
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| Q |
199 |
ggaggtacaaagaccacatccaacaatggctaccactaagactagctatacaacactacctatg |
262 |
Q |
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| T |
31610343 |
ggaggtacaaagaccacatctatcaatggctaccactaagactagctatacaacgctagctatg |
31610280 |
T |
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