View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_low_34 (Length: 269)
Name: NF6221_low_34
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 43817213 - 43817453
Alignment:
| Q |
19 |
tcccaacactgcgccattgcaaacacaccaccttccccatccacagaaaatttatgttccccggcacccttggtcactttcaaaatcaccgtctcaacat |
118 |
Q |
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| T |
43817213 |
tcccaacactgcgccattgcaaacgcaccaccttccccatccacagaaaatttatgttccccggcacccttggtcactttcaaaatcaccgtctcaacat |
43817312 |
T |
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| Q |
119 |
gtttcgcatccaccgtctctcccttttccgtggacccacatattttcgtatcacgcgataaatctacactctcatcaaagaaagtgtagttatcataacg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43817313 |
gtttcgcatccaccgtctctcccttttccgtggacccacatattttcgtatcacgcgataaatctacactctcatcaaagaaagtgtagttatcataacg |
43817412 |
T |
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| Q |
219 |
aagaaaacaaccgtcgaggtaaattctacctgaaacctttg |
259 |
Q |
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| T |
43817413 |
aagaaaacaaccgtcgaggtaaattctacctgaaacctttg |
43817453 |
T |
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