View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_low_38 (Length: 239)
Name: NF6221_low_38
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_low_38 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 2592470 - 2592249
Alignment:
| Q |
18 |
atacagtatattttcactcaaatctttccaatcagcaatcnnnnnnngtgtggaaaatcaaaatgagaaggaacaagctcttcctagttaggtagatata |
117 |
Q |
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| T |
2592470 |
atacattatattttcactcaaatctttccaatcagcaatcaaaaaaagtgtggaaaatcaaaatgagaaggaacaagctcttcctagttaggtagatata |
2592371 |
T |
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| Q |
118 |
tataattaatcagaagaaaatcttcttaattaattaataacttatctcataatagtgaagaaggaaaaggagaaagtgaattaggtgttcccatatgtga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592370 |
tataattaatcagaagaaaatcttcttaattaattaataacttatctcataatagtgaagaaggaaaaggagaaagtgaattaggtgttcccatatgtga |
2592271 |
T |
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| Q |
218 |
tgagtttggtactagtacttgt |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
2592270 |
tgagtttggtactagtacttgt |
2592249 |
T |
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