View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_low_43 (Length: 224)
Name: NF6221_low_43
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_low_43 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 19267251 - 19267063
Alignment:
| Q |
20 |
caaaacccgctctaataggagttcccaagtagctaccgtcaacattaagcacaaaactgttaaaattgttttcattccagcgtaccgtgcgaccaggcgt |
119 |
Q |
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| T |
19267251 |
caaaacccgctctaataggagttcccaagcagctaccgtcaacattaagcacaaaactgttaaaattgttttcattccagcgtaccgtgcgaccaggcgt |
19267152 |
T |
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| Q |
120 |
ggggattatttcagaatgcagtgcattttcaattgcttccaccgcatgttgaacttggaactggatgcgaacaagagaccatggttcat |
208 |
Q |
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| T |
19267151 |
ggtgattacttcagaatgcagtgcattttcaattgcttccaccgcatgttgaacttggaactggatgcgaacaagagaccatggttcat |
19267063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 3777361 - 3777549
Alignment:
| Q |
20 |
caaaacccgctctaataggagttcccaagtagctaccgtcaacattaagcacaaaactgttaaaattgttttcattccagcgtaccgtgcgaccaggcgt |
119 |
Q |
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| T |
3777361 |
caaaacccgctctaataggagttcccaagcagctacc-tcaacattaagcacaaaactgttaaaattgttttcattccagcgtaccgtgcgaccaggcgt |
3777459 |
T |
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| Q |
120 |
ggggattatttcagaatgcagtgcattttcaattgcttccaccgcatgttgaacttggaactggatgcgaacaagagaccatggttcatc |
209 |
Q |
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| T |
3777460 |
ggggattacttcagaatgcagtgcattttcaattgcttccaccgcatgttgaacttggaactgtatgcgaacaagagaccatggttcatc |
3777549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 40330015 - 40329832
Alignment:
| Q |
20 |
caaaacccgctctaataggagttcccaagtagctaccgtcaacattaagcacaaaactgttaaaattgttttcattccagcgtaccgtgcgaccaggcgt |
119 |
Q |
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| T |
40330015 |
caaaacccgctctaataggagttcccaatcagctaccgtcaacattgagcacaaaactgttaaaattgttttcattccagcgtaccatgcgatcaggcgt |
40329916 |
T |
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| Q |
120 |
ggggattatttcagaatgcagtgcattttcaattgcttccaccgcatgttgaacttggaactggatgcgaacaagagaccatgg |
203 |
Q |
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| T |
40329915 |
ggggattacttcagaatgcagcgcattttcaattgcttccaccgcattttgaatttggaactggatgcgaacaagagaccatgg |
40329832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 35133531 - 35133714
Alignment:
| Q |
20 |
caaaacccgctctaataggagttcccaagtagctaccgtcaacattaagcacaaaactgttaaaattgttttcattccagcgtaccgtgcgaccaggcgt |
119 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
35133531 |
caaaacccgctctaataggagatcccaagcagctaccgtcaacattgagcacaaaactgttaaaattgttttcattccagcgtaccatgcgatcaggcgt |
35133630 |
T |
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| Q |
120 |
ggggattatttcagaatgcagtgcattttcaattgcttccaccgcatgttgaacttggaactggatgcgaacaagagaccatgg |
203 |
Q |
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| T |
35133631 |
ggggataacttcagaatgcagcgcattttcaattgcttccaccacattttgaatttggaactggatgcgaacaagagaccatgg |
35133714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 22902304 - 22902485
Alignment:
| Q |
20 |
caaaacccgctctaatagg-agttcccaagtagctaccgtcaacattaagcacaaaactgttaaaattgttttcattccagcgtaccgtgcgaccaggcg |
118 |
Q |
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| T |
22902304 |
caaaacccgctctaatagggagttcccaagcagctaccatcaacattgagcacaaaacaattaaagttgctgtcattccagcgaaccatgcgatcagg-a |
22902402 |
T |
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| Q |
119 |
tgggga-ttatttcagaatgcagtgcattttcaattgcttccaccgcatgttgaacttggaactggatgcgaacaagagacca |
200 |
Q |
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| T |
22902403 |
tgggaagttgcttcagaatgcagcgcgttttcaatcgtttccaccgtgttttgaatttggaaattgatacgaacaagggacca |
22902485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 79494 - 79433
Alignment:
| Q |
20 |
caaaacccgctctaataggagttcccaagtagctaccgtcaacattaagcacaaaactgtta |
81 |
Q |
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| T |
79494 |
caaaaccagctcgaataggagttcccaagcagctaccatccacattgagcacaaaacagtta |
79433 |
T |
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