View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_low_5 (Length: 559)
Name: NF6221_low_5
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Original strand, 34570454 - 34571001
Alignment:
| Q |
1 |
aagcatttatattgtctgtgctcaaattgtgaaccaaatttagtacctgtaaatgcaattttctcttcagggaacatgtgaaatcattgattagaaattc |
100 |
Q |
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| T |
34570454 |
aagcatttatattgtctgtgctcaaattgtgaaccaaatttagtacctgtaaatgcaattttctcttcagggaacatgtgaaatcattgattagaaattc |
34570553 |
T |
|
| Q |
101 |
ttctggaggcaacccaaacaatttctggaatgtagaattcctttgaggtgatggaagattgaactgcaatagaaccctcaatagtcagaaacaataatta |
200 |
Q |
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| T |
34570554 |
ttctggtggcaacccaaacaatttctggaatgtagaattcctttgaggtgatggaagattgaactgcaatagaaccctcaatagtcagaaacaataatta |
34570653 |
T |
|
| Q |
201 |
gttaatttcttattgttctatgactaagagtctatgacatattcaaatatattcacataatcatatatacatggggtatgatgaagattgtgcttacctt |
300 |
Q |
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| T |
34570654 |
gttaatttcttattgttctatgactaagagtctatgacatattcaaatatattcacataatcatatatacatggggtatgatgaagattgtgcttacctt |
34570753 |
T |
|
| Q |
301 |
ttttcctacttccttttccttcttctccaagtaatccttgataatttcaactcctttgttattgtccaagaaaattctcaaatgcaatttcgattgagca |
400 |
Q |
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| T |
34570754 |
ttttcctacttccttttccttcttctccaagtaatccttgataattgcaactcctttgttattgtccaagaaaattctcaaatgcaatttcgattgagca |
34570853 |
T |
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| Q |
401 |
gattgggcgagttttccttcaagcacgagccacatgtctgccaattctgtggatgtatgctttaggaaattgatctcagcatgtccaagtgaaacatcct |
500 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34570854 |
gattgggcgagttttccttcaagcacgacccacatgtctgccaattctgtggatgtatgctttaggaaattgatctcagcatgtccaagtgaaacatcct |
34570953 |
T |
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| Q |
501 |
ggtcaaatggaccgtcaaaatcaaaaacttccacatacaaaactgatg |
548 |
Q |
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| T |
34570954 |
ggtcaaatggaccgtcaaaatcaaaaacttccacatacaaaactgatg |
34571001 |
T |
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