View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6221_low_8 (Length: 479)

Name: NF6221_low_8
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6221_low_8
NF6221_low_8
[»] chr7 (3 HSPs)
chr7 (1-468)||(14744527-14744994)
chr7 (138-227)||(29099228-29099318)
chr7 (139-216)||(41808764-41808841)
[»] chr5 (2 HSPs)
chr5 (1-454)||(17582342-17582798)
chr5 (130-439)||(34515271-34515580)
[»] chr3 (3 HSPs)
chr3 (108-294)||(51766548-51766732)
chr3 (125-217)||(50731448-50731540)
chr3 (125-217)||(50781314-50781406)
[»] chr1 (2 HSPs)
chr1 (103-233)||(46173614-46173746)
chr1 (168-217)||(47476372-47476421)
[»] chr2 (3 HSPs)
chr2 (138-235)||(36148779-36148876)
chr2 (127-215)||(36264775-36264863)
chr2 (168-215)||(40877754-40877801)
[»] chr8 (2 HSPs)
chr8 (158-258)||(10675054-10675154)
chr8 (138-208)||(12145892-12145962)
[»] chr6 (1 HSPs)
chr6 (105-193)||(7076407-7076494)
[»] chr4 (4 HSPs)
chr4 (126-217)||(26141926-26142017)
chr4 (171-233)||(44278756-44278818)
chr4 (139-217)||(32573463-32573539)
chr4 (125-217)||(26001843-26001934)


Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 14744994 - 14744527
Alignment:
Q  1 atatcaatcatgagaagaataatgaacaaagcgccactgatcccaacgataatagagaaacattaaaagtggtcgcccaatttatcactgaagccgaact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||  |||||    
T  14744994 atatcaatcatgagaagaataatgaacaaagcgccactgatcccaacggtaatatagaaacattaaaagtggtcgcccaatctatcactgaagttgaact 14744895  T
Q  101 tgttcagaggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttaccta 200  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  14744894 tgttcggaggcggacctaggtggagacatgggaggaccatggcctccccaaagtctcaaaaacttcatttttaacaggtatataaacatatttttaccta 14744795  T
Q  201 aatgttatgttatatattgtaacgtttacattatacgtcactcgtttacactccagcacagtggtaatgcatctcgcctttgagctttaggttgcttatt 300  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14744794 aatgttatgttatatattgtaacgtttacgttatacgtcacttgtttacactccagcacagtggtaatgcatctcgcctttgagctttaggttgcttatt 14744695  T
Q  301 tgatccttgattcgtccatttttatcctttcactagtgttttttgcatttttaaacaaaagatgcgatgaaaatattgcacaatgcaagtattgaaccat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14744694 tgatccttgattcgtccatttttatcctttcactagtgttttttgcatttttaaacaaaagatgcgatgaaaatattgcacaatgcaagtattgaaccat 14744595  T
Q  401 gattagggttgcaaaatacaaacatcccaaccacttgacctacacctttagattttaattattttgat 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14744594 gattagggttgcaaaatacaaacatcccaaccacttgacctacacctttagattttaattattttgat 14744527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 29099228 - 29099318
Alignment:
Q  138 catggcctccccaaagtctcaaaaacttct-tttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgttt 227  Q
    ||||||||||||||||| | ||||| |||  ||||||| ||||||||| ||||||||||| ||||||||||||||||||||  ||||||||    
T  29099228 catggcctccccaaagtttaaaaaaattccatttttaataggtatatagacacatttttaactaaatgttatgttatatatattaacgttt 29099318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 41808764 - 41808841
Alignment:
Q  139 atggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatata 216  Q
    ||||||||| ||||||||||||   ||| ||||||| |||||| || | ||||||||||||||| ||||| |||||||    
T  41808764 atggcctcctcaaagtctcaaagttttcatttttaataggtatgtatatacatttttacctaaaagttatattatata 41808841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 17582342 - 17582798
Alignment:
Q  1 atatcaatcatgagaagaataatgaacaaagcgccactgatcccaacgataatagagaaacattaaaagtggtcgcccaatttatcactgaagccgaact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||| ||||||| ||||||||||    
T  17582342 atatcaatcatgagaagaataatgaacaaagcgccactgatcccaacagtaatatagaaacattaaaagtggtcgcccaatctatcactaaagccgaact 17582441  T
Q  101 tgttcagaggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttaccta 200  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17582442 tgttcagaggtggacctaggtggagacatgggaggaccatggcctccccaaagtctcaaaaacttcatttttaacaggtatataaacacatttttaccta 17582541  T
Q  201 aatgttatgttatatattgtaacgtttacattatacgtcactcgtttacactccagcacagtggtaatgcatctcgcctttgagctttaggttgcttatt 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17582542 aatgttatgttatatattgtaacgtttacattatacatcactcgtttacactccagcacagtggtaatgcatctcgcctttgagctttaggttgcttctt 17582641  T
Q  301 tgatccttgattcgtccatttttatcctttcactagtgttttttgcatttttaaacaaaagatgcgatgaaaatattgcacaatgcaagtattgaaccat 400  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17582642 tgatccttgattcgtccacttttatcctttcactagtgttttttgcatttttaaacaaaagatgcgatgaaaatattgcacaatgcaagtattgaaccat 17582741  T
Q  401 gattagg---gttgcaaaatacaaacatcccaaccacttgacctacacctttagatt 454  Q
    |||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  17582742 gattagggttgttgcaaaatacaaacatcccaaccacttgacctacacctttagatt 17582798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 130 - 439
Target Start/End: Complemental strand, 34515580 - 34515271
Alignment:
Q  130 gggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttac 229  Q
    |||||| ||| |||||||||||||||||||||| ||| ||||||  || |||||||||||||||| | |||| |||||| ||||||||  ||||||||||    
T  34515580 gggagggccagggcctccccaaagtctcaaaaatttcatttttagtagatatataaacacatttt-atctaattgttatattatatatactaacgtttac 34515482  T
Q  230 attatacgtcactcgtttacactccagcacagtggtaatgcatctcgcctttgagctttaggttgcttatttgatccttga-ttcgtccatttttatcct 328  Q
    || | |  ||  || | |  | ||| || ||||||| ||||| ||| | | | |||||||||| |  | |  ||||||  | || |  |||||||| |||    
T  34515481 ataacatatccatcatatgtagtccggcgcagtggtcatgcaactcacatataagctttaggtcgtgtgtccgatcctccagtttggtcatttttagcct 34515382  T
Q  329 ttcactagtgttttttgcatttttaaacaaaagatgcgatgaaaatattgcacaatgcaagtattgaaccatgattagggttgcaaaatacaaacatccc 428  Q
     |||  ||| ||||||| ||||||| |||||| |||| ||||||||  || | | |||||||||||||||||| || ||||||||||||||||||||||     
T  34515381 atcagcagtattttttgtatttttatacaaaaaatgccatgaaaatgctgtaaattgcaagtattgaaccatggtttgggttgcaaaatacaaacatcca 34515282  T
Q  429 aaccacttgac 439  Q
    |||||||||||    
T  34515281 aaccacttgac 34515271  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 294
Target Start/End: Complemental strand, 51766732 - 51766548
Alignment:
Q  108 aggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgtta 207  Q
    ||||||| |||||||| || | |||| |  ||||||||||||||||||||||||| ||| ||||||| |||||||  |||||||||||| ||||||||||    
T  51766732 aggcggagctaggtggggaaaggggatggtcatggcctccccaaagtctcaaaaatttcatttttaataggtata--aacacatttttagctaaatgtta 51766635  T
Q  208 tgttatatattgtaacgtttacattatacgtcactcgtttacactccagcacagtggtaatgcatctcgcctttgagctttaggttg 294  Q
    | |||||||| |||| |||||||| ||| ||||  | |||||| ||||||||||  ||||| ||||||||||||||||||| |||||    
T  51766634 tattatatatagtaatgtttacatcataagtcatacatttacagtccagcacagcagtaatccatctcgcctttgagcttttggttg 51766548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 50731540 - 50731448
Alignment:
Q  125 gacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 217  Q
    ||||||||||| ||||| |||||| | |||||||||   ||  ||||||| |||||| || | ||||||||||||||| ||||| ||||||||    
T  50731540 gacatgggagggccatgacctcccgagagtctcaaagtttttatttttaataggtatgtatatacatttttacctaaaagttatattatatat 50731448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 50781314 - 50781406
Alignment:
Q  125 gacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 217  Q
    ||||||||||| ||||| |||||| | |||||||||   ||  ||||||| |||||| || | ||||||||||||||| ||||| ||||||||    
T  50781314 gacatgggagggccatgacctcccgagagtctcaaagtttttatttttaataggtatgtatatacatttttacctaaaagttatattatatat 50781406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 233
Target Start/End: Complemental strand, 46173746 - 46173614
Alignment:
Q  103 ttcagaggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctc-aaaaacttcttttttaacagg--tatataaacacatttttacct 199  Q
    |||||||||||| |||||||| |||  |||| ||||||||| |||||||| |||| |||||  || ||||||| |||  |||||||||||| ||||||||    
T  46173746 ttcagaggcggatctaggtggggactggggatgaccatggcgtccccaaaatctcaaaaaaaatcatttttaataggtatatataaacaca-ttttacct 46173648  T
Q  200 aaatgttatgttatatattgtaacgtttacatta 233  Q
    |||| |||| |||||||| || ||| ||||||||    
T  46173647 aaatattatattatatatagtgacgcttacatta 46173614  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 47476421 - 47476372
Alignment:
Q  168 tttttaacaggtatataaacacatttttacctaaatgttatgttatatat 217  Q
    ||||||| ||||||||| ||||||||||| |||||| ||||||| |||||    
T  47476421 tttttaataggtatatatacacatttttaactaaatattatgttgtatat 47476372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 36148876 - 36148779
Alignment:
Q  138 catggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattata 235  Q
    ||||||||||||||||| | |||||   | ||||||| ||||||||| ||||| |||||  |||||||||||||||||||  |||||||| |||||||    
T  36148876 catggcctccccaaagtttaaaaaaaaacatttttaataggtatatatacacagttttaattaaatgttatgttatatatattaacgtttgcattata 36148779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 36264863 - 36264775
Alignment:
Q  127 catgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatat 215  Q
    |||||||||  ||||||||||||||||| || |||| ||  ||||||| |||||||||   ||||||||| ||||||||||||||||||    
T  36264863 catgggagggtcatggcctccccaaagtatccaaaattttatttttaataggtatatattaacatttttagctaaatgttatgttatat 36264775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 40877754 - 40877801
Alignment:
Q  168 tttttaacaggtatataaacacatttttacctaaatgttatgttatat 215  Q
    ||||||| || |||||| ||||||||||| ||||||||||||||||||    
T  40877754 tttttaatagttatatatacacatttttagctaaatgttatgttatat 40877801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 10675154 - 10675054
Alignment:
Q  158 aaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattatacgtcactcgtttacactccagc 257  Q
    ||||| ||| ||||||| |||| || | ||||||||||| ||||||||||||||||||||  |||||||| ||||||| |||||   ||||||||| |||    
T  10675154 aaaaaattcatttttaataggtgtaaatacacatttttaactaaatgttatgttatatatattaacgtttgcattataagtcacgtctttacactctagc 10675055  T
Q  258 a 258  Q
    |    
T  10675054 a 10675054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 12145892 - 12145962
Alignment:
Q  138 catggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttat 208  Q
    |||||| |||||||||| | ||||| ||| ||||||| ||||||||| |||||||||||  ||||||||||    
T  12145892 catggcatccccaaagttttaaaaaattcatttttaataggtatatatacacatttttaattaaatgttat 12145962  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 7076494 - 7076407
Alignment:
Q  105 cagaggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacattt 193  Q
    |||||||||| |||||||| |||  || |||  ||||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||    
T  7076494 cagaggcggagctaggtgg-gactgggaagggacatggcctccccaaagtctcaaaaatttcatttttaacatgtacataaacacattt 7076407  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 26141926 - 26142017
Alignment:
Q  126 acatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 217  Q
    |||||||||| |||||||||||| ||||||||||| | |||  |||||| |||||||||   |||||||||  || ||||||||||||||||    
T  26141926 acatgggagggccatggcctcccgaaagtctcaaacatttcaattttaataggtatatactgacatttttagttatatgttatgttatatat 26142017  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 44278818 - 44278756
Alignment:
Q  171 ttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacatta 233  Q
    |||| ||||||||||| ||||||||| ||||||||||| ||||||||  |||||||| |||||    
T  44278818 ttaataggtatataaatacatttttaactaaatgttatattatatatattaacgtttgcatta 44278756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 32573463 - 32573539
Alignment:
Q  139 atggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 217  Q
    |||||||||| ||||||||||||| ||| ||||||| |  ||||||   ||||||| | ||||||||||||||||||||    
T  32573463 atggcctccctaaagtctcaaaaatttcatttttaata--tatatatcgacattttgagctaaatgttatgttatatat 32573539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 26001843 - 26001934
Alignment:
Q  125 gacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 217  Q
    |||||| || |||||| ||  ||||||| ||||||||| ||| | ||||| |||||||||   ||||||| | ||||||||||||||||||||    
T  26001843 gacatgagatgaccatcgctcccccaaaatctcaaaaatttcatatttaataggtatatattgacatttt-agctaaatgttatgttatatat 26001934  T

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