View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6221_low_9 (Length: 476)
Name: NF6221_low_9
Description: NF6221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6221_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 5 - 466
Target Start/End: Complemental strand, 2592171 - 2591701
Alignment:
| Q |
5 |
ttcattcaactcttcttgtctttgcaattgcaatgactccaatgttaataactctcctccttcctcatccatattacaagattgcacttgatcaattggc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592171 |
ttcattcaactcttcttgtctttgcaattgcaatgactccaatgttaataactctcctccttcctcatccatattacaagattgcacttgatcaattggc |
2592072 |
T |
|
| Q |
105 |
accatgctgttttccacattattctctatcaatggtggaagattataattactagtatcatgaattgttgtaaaagctattgcagctggatgaggaggaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592071 |
accatgctgttttccacattattctctatcaatggtggaagattataattactagtatcatgaattgttgtaaaagctattgcagctggatgaggaggaa |
2591972 |
T |
|
| Q |
205 |
gtgtctgaacttgatgatg---------atcatggtgattcaagttccatgtgtcagaactcaaactcacagaatcatgatggaatagtacttctggtct |
295 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591971 |
gtgtctgaacttgatgatgttgatgatgatcatggtgattcaagttccatgtgtcagaactcaaactcacagaatcatgatggaatagtacttctggtct |
2591872 |
T |
|
| Q |
296 |
tattacattggtgtctgttgctgttgtttcatgcagtgaacttgtgtcaaacataaataaaggacatgttgatgaaaataaggtttcttttgttgttaca |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591871 |
tattacattggtgtctgttgctgttgtttcatgcagtgaacttgtgtcaaacataaataaaggacatgttgatgaaaataaggtttcttttgttgttaca |
2591772 |
T |
|
| Q |
396 |
ttttcttggttggtaaagtaattatctagttgattaatggaactataattgatcaactgaggatgatgatg |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591771 |
ttttcttggttggtaaagtaattatctagttgattaatggaactataattgatcaactgaggatgatgatg |
2591701 |
T |
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