View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6222_high_11 (Length: 244)

Name: NF6222_high_11
Description: NF6222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6222_high_11
NF6222_high_11
[»] chr8 (4 HSPs)
chr8 (1-227)||(44306983-44307209)
chr8 (11-227)||(44301891-44302107)
chr8 (1-216)||(43896529-43896744)
chr8 (50-227)||(44317214-44317391)
[»] chr4 (1 HSPs)
chr4 (45-216)||(18702172-18702343)
[»] chr6 (1 HSPs)
chr6 (45-227)||(8158610-8158792)
[»] chr3 (1 HSPs)
chr3 (45-181)||(4084682-4084818)
[»] chr5 (1 HSPs)
chr5 (41-90)||(35856486-35856535)
[»] chr2 (5 HSPs)
chr2 (40-91)||(10492781-10492832)
chr2 (40-91)||(6915256-6915307)
chr2 (40-91)||(7476567-7476618)
chr2 (40-91)||(10463596-10463647)
chr2 (42-87)||(10474173-10474218)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 44306983 - 44307209
Alignment:
Q  1 taagtagttctaacccctcgtatctctcgtcactgaaagtacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgcatcatcgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44306983 taagtagttctaacccctcgtatctctcgtcactgaaagtacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgcatcatcgag 44307082  T
Q  101 aacagactctgaaatttggctgccaccatgaaaatcttcagaaagtttatcatcaacctctgatacaatttcaatgagttcacatcnnnnnnncaacaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||||||    
T  44307083 aacagactctgaaatttggctgccaccatgaaaatcttcagaaagtttatcatcaacctctgatacaatttcaatgagttcacgtctttttttcaacaca 44307182  T
Q  201 aaggcttgcatatctttggctacttct 227  Q
    |||||||||||||||||||||||||||    
T  44307183 aaggcttgcatatctttggctacttct 44307209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 44301891 - 44302107
Alignment:
Q  11 taacccctcgtatctctcgtcactgaaagtacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgcatcatcgagaacagactct 110  Q
    ||||||||| ||||||||  |||||| | ||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||  |||||||    
T  44301891 taacccctcatatctctcaccactgataatacccataaaaattggtacaaatttccttgctatggttgccccacgaattgcatcatcgagataagactct 44301990  T
Q  111 gaaatttggctgccaccatgaaaatcttcagaaagtttatcatcaacctctgatacaatttcaatgagttcacatcnnnnnnncaacacaaaggcttgca 210  Q
      ||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| | ||       |||||||||||||||||    
T  44301991 agaatttggcttccaccatgaaaagcttcagaaagtttatcatcaacctccgatacaatttcaatgagttcgcgtcttttcttcaacacaaaggcttgca 44302090  T
Q  211 tatctttggctacttct 227  Q
    ||||||||| |||||||    
T  44302091 tatctttgggtacttct 44302107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 43896529 - 43896744
Alignment:
Q  1 taagtagttctaacccctcgtatctctcgtcactgaaagtacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgcatcatcgag 100  Q
    |||||||||||||||| || | |||||| |||| || |  |||||||||||||||||||||||||  || ||| ||||||||||||||||||||||||||    
T  43896529 taagtagttctaacccatcatgtctctcatcacagataacacccatgaaaattggtacaaatttcattgatatagttgccctacgaattgcatcatcgag 43896628  T
Q  101 aacagactctgaaatttggctgccaccatgaaaatcttcagaaagtttatcatcaacctctgatacaatttcaatgagttcacatcnnnnnnncaacaca 200  Q
    |||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || |||||||||||||| | ||       |||||||    
T  43896629 aacagattctgaaatttggctgccaccgtgaaaagcttcagaaagtttatcatcaacctctgagacgatttcaatgagttcgcttcttttcttcaacaca 43896728  T
Q  201 aaggcttgcatatctt 216  Q
    ||||||||||||||||    
T  43896729 aaggcttgcatatctt 43896744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 50 - 227
Target Start/End: Original strand, 44317214 - 44317391
Alignment:
Q  50 aattggtacaaatttccgtgctatggttgccctacgaattgcatcatcgagaacagactctgaaatttggctgccaccatgaaaatcttcagaaagttta 149  Q
    ||||||||||||||||  || ||| ||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| ||||||||||||||    
T  44317214 aattggtacaaatttcattgatatagttgccctacgaattgcatcatcgagaacagactctagaatttggcttccaccatgaaaagcttcagaaagttta 44317313  T
Q  150 tcatcaacctctgatacaatttcaatgagttcacatcnnnnnnncaacacaaaggcttgcatatctttggctacttct 227  Q
    |||||||||||||||||||||| |||||||||   ||       ||||||||||||||||||||||| || |||||||    
T  44317314 tcatcaacctctgatacaatttgaatgagttcgtgtcttttcttcaacacaaaggcttgcatatcttcgggtacttct 44317391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 18702172 - 18702343
Alignment:
Q  45 atgaaaattggtacaaatttccgtgctatggttgccctacgaattgcatcatcgagaacagactctgaaatttggctgccaccatgaaaatcttcagaaa 144  Q
    |||| ||||||||||||||||  || ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||    
T  18702172 atgataattggtacaaatttcattgatatagttgccctacgaattgcatcatcgagaacagactctggaattttgctgccaccatgaaaagctttagaaa 18702271  T
Q  145 gtttatcatcaacctctgatacaatttcaatgagttcacatcnnnnnnncaacacaaaggcttgcatatctt 216  Q
    ||||||||||||||||||| ||||||||||||||||| | ||       |||||||||||||||||||||||    
T  18702272 gtttatcatcaacctctgacacaatttcaatgagttcgcgtcttttcttcaacacaaaggcttgcatatctt 18702343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 8158792 - 8158610
Alignment:
Q  45 atgaaaattggtacaaatttccgtgctatggttgccctacgaattgcatcatcgagaacagactctgaaatttggctgccaccatgaaaatcttcagaaa 144  Q
    |||| ||||||||||||||||| |||||| |||||||| |||||||||||||| |||  |||||||| |||||||||||||||||||| | |||||||||    
T  8158792 atgataattggtacaaatttccttgctatagttgccctccgaattgcatcatccagataagactctggaatttggctgccaccatgaagagcttcagaaa 8158693  T
Q  145 gtttatcatcaacctctgatacaatttcaatgagttcacatcnnnnnnncaacacaaaggcttgcatatctttggctacttct 227  Q
     ||||||||||| ||||||||||||||||||||||||   ||       |||||||||||||||||||||||||| |||||||    
T  8158692 ttttatcatcaatctctgatacaatttcaatgagttcgtgtctttttttcaacacaaaggcttgcatatctttgggtacttct 8158610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 4084682 - 4084818
Alignment:
Q  45 atgaaaattggtacaaatttccgtgctatggttgccctacgaattgcatcatcgagaacagactctgaaatttggctgccaccatgaaaatcttcagaaa 144  Q
    |||| ||||||||||||||||| |||||| |||||||||||||||||| ||||||||  |||||||| |||||||||||||||||||| | ||||| |||    
T  4084682 atgataattggtacaaatttccttgctatagttgccctacgaattgcaccatcgagataagactctggaatttggctgccaccatgaagagcttcataaa 4084781  T
Q  145 gtttatcatcaacctctgatacaatttcaatgagttc 181  Q
     ||||||||||||||||||||||||||||||||||||    
T  4084782 ttttatcatcaacctctgatacaatttcaatgagttc 4084818  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 35856535 - 35856486
Alignment:
Q  41 acccatgaaaattggtacaaatttccgtgctatggttgccctacgaattg 90  Q
    |||||||||||||||||||||||||| |||||| || |||||||||||||    
T  35856535 acccatgaaaattggtacaaatttccttgctattgtagccctacgaattg 35856486  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 10492781 - 10492832
Alignment:
Q  40 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 91  Q
    ||||||||||||  |||||||||||  |||||||||||||||||||||||||    
T  10492781 tacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgc 10492832  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 6915307 - 6915256
Alignment:
Q  40 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 91  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  6915307 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 6915256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 7476618 - 7476567
Alignment:
Q  40 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 91  Q
    ||||||||||||  |||||||||||| ||||||| ||||||||| |||||||    
T  7476618 tacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgc 7476567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 10463596 - 10463647
Alignment:
Q  40 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 91  Q
    |||||||||||| ||||| ||||||||||||||| || || |||||||||||    
T  10463596 tacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgc 10463647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 10474173 - 10474218
Alignment:
Q  42 cccatgaaaattggtacaaatttccgtgctatggttgccctacgaa 87  Q
    |||||||| ||||||| ||| |||||||||||||| ||||||||||    
T  10474173 cccatgaatattggtataaacttccgtgctatggtggccctacgaa 10474218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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