View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6222_high_2 (Length: 517)
Name: NF6222_high_2
Description: NF6222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6222_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Complemental strand, 46632608 - 46632117
Alignment:
| Q |
16 |
gatatagcagaatagcattgaggactgctttgagctgtactgaagcaatcctcaaaatggccactgcatgcttttggactcaattctgttaaagctgatg |
115 |
Q |
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| T |
46632608 |
gatatagcagaatagcattgaggactgctttgagctgtactgaagcaatcctcaaaatggccactgcatgcttttggactcaattctgttaaagctgatg |
46632509 |
T |
|
| Q |
116 |
gagctggtgatactttgtagttttcttctttcgtgtaggaaccatttatggaatatctattttcagattgctcataatgttgtctatttacactgctgct |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46632508 |
gagctggtgatactttgtagttttcttctttcgtataggaaccatttatggaatatctattttcagattgctcataatgttgtctatttacactgctgct |
46632409 |
T |
|
| Q |
216 |
tctgcttgtagagttgccttttgattcacaaaaatccatctccacaattttgatgttgtcttccaagcctctgtccatttcctacatgcacaaaaccgaa |
315 |
Q |
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| T |
46632408 |
tctgcttgtagagttgccttttgattcacaaaaatccatctccacaattttgatgttgtcttccaagcctctgtccatttcctacatgcacaaaaccgaa |
46632309 |
T |
|
| Q |
316 |
tttcatgactataactacttcatattgttcctcatttggatagactaaacaattttataatgtaacatgttttactttggattttacaacacacaaaaga |
415 |
Q |
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| T |
46632308 |
tttcatgactagaactacttcatattgttcctcatttggatagactaaacaattttataatgtaacatgttttactttggattttacaacacacaaaaga |
46632209 |
T |
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| Q |
416 |
agcaattttctaggcactaattgagttttaagtttacttaaacnnnnnnntttgagttttaagaataagtttgttaattcccgtgacctatg |
507 |
Q |
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| T |
46632208 |
agcaattttctaggcactaattgagttttaagtttactcaagcaaaaaaaattgagttttaagaataagtttgttaattcccgtgacctatg |
46632117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 129 - 262
Target Start/End: Complemental strand, 11979843 - 11979706
Alignment:
| Q |
129 |
tttgtagttttcttctttcgtgtaggaaccatttatggaatatctattttcagattgctcataatgt---tgtctatt-tacactgctgcttctgcttgt |
224 |
Q |
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|||||| ||||||||||| | ||||||||||||| |||||||||||| |||| |||| ||||||||| | | || | ||||||| |||||||||||| |
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| T |
11979843 |
tttgtatttttcttcttttgagtaggaaccatttgtggaatatctatgttcaaattgttcataatgtccatttgtaatatacactgttgcttctgcttgc |
11979744 |
T |
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| Q |
225 |
agagttgccttttgattcacaaaaatccatctccacaa |
262 |
Q |
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| T |
11979743 |
agaattaccatttgattcacaaaaatccatctccacaa |
11979706 |
T |
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