View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6222_high_9 (Length: 345)
Name: NF6222_high_9
Description: NF6222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6222_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 29132674 - 29132354
Alignment:
| Q |
18 |
cctctctcatgcaatggcttccataagctatatcctcctcctcatattttccttcttcaatctagttcattcagctagcaatgcttcttcaatcaatgta |
117 |
Q |
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| T |
29132674 |
cctctctcatgcaatggcttccataagctatatcctcctcctcatattttccttcttcaatctagttcattcagctagcaatgcttcttcaatcaatgta |
29132575 |
T |
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| Q |
118 |
accaaacacttctccttccatgatttcagcttcactaataactcaagattagtccatgatgtgaagcttctaggaagtgcaaagttctcagatgaaaagg |
217 |
Q |
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| T |
29132574 |
accaaacacttttccttccatgatttcagcttcactaataactcaagattagtccatgatgtgaagcttctaggaagtgcaaagttctcagatgaaaagg |
29132475 |
T |
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| Q |
218 |
gttcacttcaaatcccaaatgaatcagaagaaacagatataagagatcaagcaggtagaggtttatattccttcccaattcgtttgttagatccaattac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29132474 |
gttcacttcaaatcccaaatgaatcagaagaaacagatataagacatcaagcaggtagaggtttatattccttcccaattcgtttgttagatccaatcac |
29132375 |
T |
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| Q |
318 |
caaaacaccagcttcttttca |
338 |
Q |
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||||||||||||||||||||| |
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| T |
29132374 |
caaaacaccagcttcttttca |
29132354 |
T |
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