View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6222_low_1 (Length: 585)

Name: NF6222_low_1
Description: NF6222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6222_low_1
NF6222_low_1
[»] chr1 (13 HSPs)
chr1 (19-455)||(36319066-36319512)
chr1 (378-455)||(6295186-6295263)
chr1 (396-455)||(13254159-13254218)
chr1 (375-455)||(52415701-52415781)
chr1 (384-438)||(41117554-41117608)
chr1 (398-455)||(23698858-23698915)
chr1 (375-455)||(11817485-11817565)
chr1 (407-455)||(4395552-4395600)
chr1 (375-455)||(4671967-4672047)
chr1 (396-455)||(39387083-39387142)
chr1 (77-125)||(9778013-9778060)
chr1 (379-455)||(11795459-11795535)
chr1 (376-444)||(31622770-31622838)
[»] chr7 (16 HSPs)
chr7 (375-455)||(2271330-2271410)
chr7 (375-444)||(10534415-10534484)
chr7 (383-455)||(16197400-16197472)
chr7 (396-455)||(35792519-35792578)
chr7 (394-455)||(39618240-39618301)
chr7 (383-455)||(37124728-37124800)
chr7 (378-435)||(4567952-4568009)
chr7 (394-455)||(12394801-12394862)
chr7 (375-455)||(27723828-27723908)
chr7 (376-455)||(33258968-33259047)
chr7 (384-444)||(15643714-15643774)
chr7 (526-573)||(20356850-20356897)
chr7 (375-439)||(25291037-25291102)
chr7 (407-440)||(39429950-39429983)
chr7 (375-455)||(39434499-39434580)
chr7 (384-452)||(39599320-39599388)
[»] chr3 (19 HSPs)
chr3 (375-455)||(16236982-16237062)
chr3 (375-455)||(2599607-2599687)
chr3 (394-455)||(5494169-5494230)
chr3 (375-455)||(45647142-45647222)
chr3 (376-455)||(27817988-27818067)
chr3 (395-444)||(45667999-45668048)
chr3 (403-455)||(2094317-2094369)
chr3 (375-453)||(9589311-9589389)
chr3 (383-451)||(297003-297071)
chr3 (396-444)||(34669239-34669287)
chr3 (375-455)||(38750447-38750527)
chr3 (457-508)||(39295777-39295828)
chr3 (522-564)||(39295690-39295732)
chr3 (375-440)||(7259291-7259356)
chr3 (383-455)||(27264347-27264419)
chr3 (396-451)||(37030381-37030437)
chr3 (406-455)||(12568928-12568977)
chr3 (406-455)||(13545392-13545441)
chr3 (385-445)||(42735019-42735080)
[»] chr5 (21 HSPs)
chr5 (77-184)||(14124134-14124241)
chr5 (383-455)||(17201877-17201949)
chr5 (375-455)||(39585344-39585424)
chr5 (375-455)||(28620596-28620674)
chr5 (383-455)||(1584249-1584321)
chr5 (384-455)||(6428634-6428705)
chr5 (385-455)||(1584062-1584132)
chr5 (384-453)||(19804311-19804380)
chr5 (379-455)||(32474721-32474797)
chr5 (399-455)||(12436151-12436207)
chr5 (375-455)||(20202234-20202314)
chr5 (407-455)||(25612737-25612785)
chr5 (383-451)||(37270129-37270197)
chr5 (375-440)||(17558382-17558447)
chr5 (383-455)||(248895-248967)
chr5 (407-455)||(14655383-14655431)
chr5 (416-451)||(11991712-11991747)
chr5 (384-434)||(11825179-11825229)
chr5 (398-455)||(36059566-36059623)
chr5 (403-455)||(8544148-8544200)
chr5 (383-455)||(32717603-32717674)
[»] chr4 (25 HSPs)
chr4 (375-455)||(9088737-9088817)
chr4 (383-455)||(1821071-1821143)
chr4 (375-455)||(17330966-17331046)
chr4 (384-454)||(49263619-49263689)
chr4 (375-452)||(37209536-37209613)
chr4 (378-455)||(45666855-45666932)
chr4 (394-455)||(47943971-47944032)
chr4 (383-444)||(49299320-49299381)
chr4 (375-455)||(9808167-9808245)
chr4 (375-446)||(38044238-38044309)
chr4 (375-455)||(19443038-19443118)
chr4 (375-455)||(50721483-50721563)
chr4 (396-455)||(34031481-34031540)
chr4 (396-446)||(53393929-53393979)
chr4 (378-455)||(6949565-6949642)
chr4 (394-455)||(25494312-25494373)
chr4 (394-455)||(46196529-46196590)
chr4 (375-454)||(46430393-46430472)
chr4 (384-455)||(54982157-54982228)
chr4 (394-451)||(24073344-24073401)
chr4 (375-455)||(38839889-38839969)
chr4 (384-444)||(55344144-55344204)
chr4 (383-440)||(24537904-24537961)
chr4 (414-455)||(41503110-41503151)
chr4 (376-436)||(37371013-37371073)
[»] chr6 (10 HSPs)
chr6 (456-517)||(24478642-24478703)
chr6 (375-455)||(8049909-8049989)
chr6 (456-508)||(27966316-27966368)
chr6 (521-573)||(24478505-24478557)
chr6 (384-455)||(14093211-14093281)
chr6 (375-455)||(6026588-6026668)
chr6 (375-440)||(7972249-7972314)
chr6 (375-454)||(21526911-21526990)
chr6 (383-453)||(34131974-34132044)
chr6 (373-455)||(26251998-26252080)
[»] chr2 (14 HSPs)
chr2 (378-455)||(29408324-29408401)
chr2 (396-455)||(1398029-1398088)
chr2 (383-455)||(16806034-16806106)
chr2 (383-455)||(16845315-16845387)
chr2 (394-455)||(3309418-3309479)
chr2 (456-508)||(8355845-8355897)
chr2 (375-455)||(20170904-20170984)
chr2 (376-446)||(33660684-33660754)
chr2 (383-455)||(12413014-12413086)
chr2 (383-455)||(12425074-12425146)
chr2 (522-564)||(8355992-8356034)
chr2 (383-452)||(42871902-42871971)
chr2 (376-440)||(34424369-34424433)
chr2 (375-455)||(41541721-41541801)
[»] scaffold1327 (1 HSPs)
scaffold1327 (383-455)||(1323-1395)
[»] chr8 (12 HSPs)
chr8 (375-455)||(32234238-32234318)
chr8 (376-452)||(35970069-35970145)
chr8 (383-455)||(1256235-1256307)
chr8 (375-440)||(9455647-9455712)
chr8 (378-443)||(38402097-38402161)
chr8 (397-440)||(3443332-3443375)
chr8 (375-446)||(27232232-27232303)
chr8 (383-446)||(34039438-34039501)
chr8 (397-455)||(36683466-36683524)
chr8 (377-446)||(3742293-3742362)
chr8 (394-455)||(7694904-7694965)
chr8 (375-455)||(29315227-29315307)
[»] scaffold0005 (1 HSPs)
scaffold0005 (404-455)||(257335-257386)
[»] scaffold1986 (1 HSPs)
scaffold1986 (375-455)||(693-775)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 19 - 455
Target Start/End: Original strand, 36319066 - 36319512
Alignment:
Q  19 tattccactatatccggagattaatataaaaaatgggctgtttattgctcnnnnnnna---aataattgtttaagatattacaataaacaatgttcacat 115  Q
    |||||||||||||| |||||||||||  ||||||||| |||| |||||||           ||||||||||||||||||||| ||| |||||||||||||    
T  36319066 tattccactatatcaggagattaataacaaaaatgggttgttcattgctctttttttttttaataattgtttaagatattacgatagacaatgttcacat 36319165  T
Q  116 tctaaaaaagcgttacaccttgtatcgtgaatttccgcgaaaaatgattttgcttgatatagcaacgccgttaattctaacgaccagtgtaattgggaac 215  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||    
T  36319166 tctaaaaaagcggtacaccttgtatcgtgaatttccgcaaaaaatgatttcgcttgatatagcaacgccgttaattctaacgatcagtgcaactgggaac 36319265  T
Q  216 attcatcatttgtaaaatccaaca-------gtagtagatatattactcaacatagtttcaaaattaagcaaaactacaatataacaattaataaaataa 308  Q
    ||||||| ||||||||||||||||       |||||||||||||||||||  |||| ||||||||||||||||||||| |||||||||||||||||||||    
T  36319266 attcatcctttgtaaaatccaacactatatagtagtagatatattactcagaataggttcaaaattaagcaaaactactatataacaattaataaaataa 36319365  T
Q  309 tttgtaaaatccaacactatatagtagatatattactcagcataggttcaaaattaagcaaaactactccgtttctttttaaatatctttttagaaaatt 408  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||    
T  36319366 tttgtaaaatccaacattatatagtagatatattactcagcataggttcaaaattaagcaaaattactccgttcctttttaagtatctttttagaaaatt 36319465  T
Q  409 aacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  36319466 aacacaaaaatagcgatgtgtatttttgcacattttcttcctattat 36319512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 6295186 - 6295263
Alignment:
Q  378 cgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  6295186 cgttcctttttaaatgtctttttagaaaattaacactaaaatagcgatgtgtatttttgcacattttctttctattat 6295263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 396 - 455
Target Start/End: Original strand, 13254159 - 13254218
Alignment:
Q  396 tttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||| | ||||||    
T  13254159 tttttagaaaattaacatcaaaatagcgatgtgtatttttgcacattttcttcatattat 13254218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 52415781 - 52415701
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| | || ||||||||||||| ||| |||||||| | |||||||||| |||||||||| ||||||||    
T  52415781 ctccgttcctttttaagtgtcgttttagaaaattaccacgaaaatagcaaagtgtatttttacacattttcttcctattat 52415701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 41117608 - 41117554
Alignment:
Q  384 tttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgca 438  Q
    ||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||    
T  41117608 tttttaagtgtctttttagaaaattaacaccaaactagcgatgtgtatttttgca 41117554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 455
Target Start/End: Original strand, 23698858 - 23698915
Alignment:
Q  398 tttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||||||||||| ||||||  || ||||||||||||||||||||| ||||||||    
T  23698858 tttagaaaattaacacgaaaataatgaagtgtatttttgcacattttcttcctattat 23698915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 11817485 - 11817565
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| ||||||| | |||||||| ||||||||||| ||| |||| ||| ||||||||||| ||||| | ||||||||    
T  11817485 ctccgtttatttttaagtttctttttaaaaaattaacaccaaattagcaatgcgtatttttgcagatttttttcctattat 11817565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 4395552 - 4395600
Alignment:
Q  407 ttaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||||||||||||| |||||||||| ||| |||||| ||||||||    
T  4395552 ttaacacaaaaatagcgaagtgtattttttcaccttttcttcctattat 4395600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 4672047 - 4671967
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||  ||||||| | || ||||||||||||  ||| |||||||| | ||||||||||||| ||||||| ||||||||    
T  4672047 ctccgttcttttttaagtgtcgttttagaaaatttccacgaaaatagcaaagtgtatttttgcatattttcttcctattat 4671967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 455
Target Start/End: Complemental strand, 39387142 - 39387083
Alignment:
Q  396 tttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||||||||||  |  |||||||||||||||| ||||||| ||||||| ||||||||    
T  39387142 tttttagaaaattactatcaaaatagcgatgtgtacttttgcaaattttcttcctattat 39387083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 9778013 - 9778060
Alignment:
Q  77 aataattgtttaagatattacaataaacaatgttcacattctaaaaaag 125  Q
    |||||||||||||||||||| |||||||   ||||||||||||||||||    
T  9778013 aataattgtttaagatattaaaataaac-cggttcacattctaaaaaag 9778060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 455
Target Start/End: Original strand, 11795459 - 11795535
Alignment:
Q  379 gtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||||||| | || |||||||| |||||| | ||||||  || | ||||||||||||||||||| | ||||||    
T  11795459 gtttctttttaagtgtcgttttagaatattaacgctaaaatattgaagagtatttttgcacattttcttcatattat 11795535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 444
Target Start/End: Original strand, 31622770 - 31622838
Alignment:
Q  376 tccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacatttt 444  Q
    |||||| |||||||| | || || |||||  ||| |||||||||| ||| |||||||||||||||||||    
T  31622770 tccgttcctttttaagtgtcattctagaattttagcacaaaaataacgaagtgtatttttgcacatttt 31622838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 2271330 - 2271410
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  2271330 ctccgtttctttttaagtgtctttttaggaaattaacaccaaaatagcgatgtgtatttttgcacattttcttcctattat 2271410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 444
Target Start/End: Original strand, 10534415 - 10534484
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacatttt 444  Q
    ||||||| |||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  10534415 ctccgttcctttttaaatgtctttttagaaaattaacaccaaaataacgatgtgtatttttgcacttttt 10534484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 383 - 455
Target Start/End: Complemental strand, 16197472 - 16197400
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| | |||||||||||||||||||| ||||||| ||||||||||||||||||||||||  |||||||    
T  16197472 ctttttaagtgtctttttagaaaattaacaccaaaatagtgatgtgtatttttgcacattttctttctattat 16197400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 396 - 455
Target Start/End: Original strand, 35792519 - 35792578
Alignment:
Q  396 tttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||    
T  35792519 tttttagaaaattaacacaaaaatagcgatgtgtatttttgcatatttttttcctattat 35792578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 39618301 - 39618240
Alignment:
Q  394 tctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||||||||||||||| |||||||  |||||||||||||||||||||||| ||||||||    
T  39618301 tctttttagaaaattaacataaaaatatagatgtgtatttttgcacattttcttcctattat 39618240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 383 - 455
Target Start/End: Complemental strand, 37124800 - 37124728
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| | |||||||||||||||| ||  |||||||| |||||| |||||||||||||||| ||||||||    
T  37124800 ctttttaagtgtctttttagaaaattagcatcaaaatagcaatgtgtgtttttgcacattttcttcctattat 37124728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 4568009 - 4567952
Alignment:
Q  378 cgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtattttt 435  Q
    ||||||||||||||| |||||||||||||||||||  |||||||||  ||||||||||    
T  4568009 cgtttctttttaaatgtctttttagaaaattaacatcaaaatagcgcagtgtattttt 4567952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 12394862 - 12394801
Alignment:
Q  394 tctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||||||||| ||||| ||||||  |||||| ||||||||||||||||| ||||||||    
T  12394862 tctttttagaaaatgaacaccaaaataatgatgtgcatttttgcacattttcttcctattat 12394801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 27723908 - 27723828
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| ||||| || | || ||||||||||||||||| ||||||||||||| |||||||  | ||||||| ||||||||    
T  27723908 ctccgttccttttgaagtgtcgttttagaaaattaacaccaaaatagcgatgtatatttttaaatattttcttcctattat 27723828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 455
Target Start/End: Complemental strand, 33259047 - 33258968
Alignment:
Q  376 tccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||| |||||||| | || |||||||| |||||||| |||||| ||| ||||||||||| | ||||||| ||||||||    
T  33259047 tccgttcctttttaagtgtcgttttagaatattaacaccaaaataacgaagtgtatttttgtagattttcttcctattat 33258968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 15643774 - 15643714
Alignment:
Q  384 tttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacatttt 444  Q
    ||||||| | || ||||||||| |||||||||||||||  | |||||||||||||||||||    
T  15643774 tttttaagtgtcgttttagaaatttaacacaaaaatagttaagtgtatttttgcacatttt 15643714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 20356850 - 20356897
Alignment:
Q  526 cccactgatgtgatacgttctttttaaaatttaatatcagggttttca 573  Q
    ||||||||||| |||| |||| |||||||||||| |||||||||||||    
T  20356850 cccactgatgttataccttctctttaaaatttaacatcagggttttca 20356897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 439
Target Start/End: Complemental strand, 25291102 - 25291037
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaatt-aacacaaaaatagcgatgtgtatttttgcac 439  Q
    ||||||| |||||||| | || ||||||||  || |||||||||||||||| ||||||||||||||    
T  25291102 ctccgttcctttttaagtgtcgttttagaatttttaacacaaaaatagcgaagtgtatttttgcac 25291037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 440
Target Start/End: Original strand, 39429950 - 39429983
Alignment:
Q  407 ttaacacaaaaatagcgatgtgtatttttgcaca 440  Q
    |||||||||||||||||| |||||||||||||||    
T  39429950 ttaacacaaaaatagcgaagtgtatttttgcaca 39429983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 39434580 - 39434499
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaatt-aacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| | || ||||||||  || || ||||||||||||| ||||||||||||||| ||| | ||||||||    
T  39434580 ctccgttcctttttaagtgtcgttttagaatttttaatacaaaaatagcgaagtgtatttttgcacacttttttcctattat 39434499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 452
Target Start/End: Original strand, 39599320 - 39599388
Alignment:
Q  384 tttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctat 452  Q
    ||||||||| || ||| |||| |||||||| ||| |||||| ||| |||||||||||||| || |||||    
T  39599320 tttttaaatgtcgtttaagaatattaacacgaaattagcgaagtgaatttttgcacatttacttcctat 39599388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 16236982 - 16237062
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  16236982 ctccgttcctttttaagtgtctttttagaaaattaacacaaaaatagcgatgtgtattttttcacattttcttcctattat 16237062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 2599687 - 2599607
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  2599687 ctccgttcctttttaagtgtctttttagaaaattaacactaaaatagcgatgtgtatttttgcacattttattcctattat 2599607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 5494230 - 5494169
Alignment:
Q  394 tctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  5494230 tctttttagaaaattaatacaaaaatagtgatgtgtatttttgcacattttcttcctattat 5494169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 45647222 - 45647142
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||  ||||||| | | ||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||    
T  45647222 ctccgttcatttttaagtgtttttttagaaaattaacataaaaatagcgatgtgtattcttgcacattttcttcctattat 45647142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 376 - 455
Target Start/End: Complemental strand, 27818067 - 27817988
Alignment:
Q  376 tccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||| |||||||| | | ||||||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||||    
T  27818067 tccgttcctttttaagtgtttttttagaaaattaacacaaaaataacgatgtgcatttttgcacattttattcctattat 27817988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 45668048 - 45667999
Alignment:
Q  395 ctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacatttt 444  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  45668048 ctttttagaaaatcaacacaaaaatagcgatgtgtatttttgcacttttt 45667999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 403 - 455
Target Start/End: Complemental strand, 2094369 - 2094317
Alignment:
Q  403 aaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| ||||||||    
T  2094369 aaaattaacaccaaaatagtgatgtgtatttttgcacattttcttcctattat 2094317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 375 - 453
Target Start/End: Complemental strand, 9589389 - 9589311
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctatt 453  Q
    |||||||| ||||||| | || |||||||| |||||||| |||||||| | |||||||||||||| |||||| ||||||    
T  9589389 ctccgtttatttttaagtgtcattttagaatattaacaccaaaatagcaaagtgtatttttgcactttttcttcctatt 9589311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 451
Target Start/End: Complemental strand, 297071 - 297003
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgccta 451  Q
    |||||||| | || |||||||| |||||||| |||||||||| ||||||||||| ||||||||| ||||    
T  297071 ctttttaagtgtcgttttagaatattaacaccaaaatagcgaagtgtatttttgtacattttcttccta 297003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 444
Target Start/End: Complemental strand, 34669287 - 34669239
Alignment:
Q  396 tttttagaaaattaacacaaaaatagcgatgtgtatttttgcacatttt 444  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  34669287 tttttggaaaattaacattaaaatagcgatgtgtatttttgcacatttt 34669239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 38750447 - 38750527
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| | || ||||||||||||  ||  |||||||| | ||||||||||||||||||||| ||||||||    
T  38750447 ctccgttcctttttaagtgtcgttttagaaaattttcatgaaaatagcaaagtgtatttttgcacattttcttcctattat 38750527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 508
Target Start/End: Complemental strand, 39295828 - 39295777
Alignment:
Q  457 actactacagaaataaattttcacatcagttggaaactacttttcacatcag 508  Q
    |||||||||||||| | |||| |||||||||||||| |||||||||||||||    
T  39295828 actactacagaaatgagtttttacatcagttggaaagtacttttcacatcag 39295777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 522 - 564
Target Start/End: Complemental strand, 39295732 - 39295690
Alignment:
Q  522 ttttcccactgatgtgatacgttctttttaaaatttaatatca 564  Q
    ||||||||||||||||||||||||| |||||||||||| ||||    
T  39295732 ttttcccactgatgtgatacgttctctttaaaatttaagatca 39295690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 7259291 - 7259356
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcaca 440  Q
    ||||||| |||||||| | || ||||||||  |||||||||||||||| | |||||||||||||||    
T  7259291 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatagcaaagtgtatttttgcaca 7259356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 455
Target Start/End: Complemental strand, 27264419 - 27264347
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| | |||||||| ||||||||||| ||| ||||| ||| |||||||| | ||||||| ||||||||    
T  27264419 ctttttaagtgtctttttaaaaaattaacaccaaattagcgttgtttatttttgtatattttcttcctattat 27264347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 451
Target Start/End: Original strand, 37030381 - 37030437
Alignment:
Q  396 tttttagaaaattaacacaaaaatagcgatgtgta-tttttgcacattttctgccta 451  Q
    ||||||||||||||||||||||||  ||| ||||| |||||||||||||||| ||||    
T  37030381 tttttagaaaattaacacaaaaatcacgaagtgtattttttgcacattttcttccta 37030437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 455
Target Start/End: Complemental strand, 12568977 - 12568928
Alignment:
Q  406 attaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| ||||||| || ||||||||||||||||||||| | ||||||    
T  12568977 attaacaccaaaatagtgaagtgtatttttgcacattttcttcttattat 12568928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 455
Target Start/End: Complemental strand, 13545441 - 13545392
Alignment:
Q  406 attaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| ||||||| || ||||||||||||||||||||| | ||||||    
T  13545441 attaacaccaaaatagtgaagtgtatttttgcacattttcttcttattat 13545392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 42735019 - 42735080
Alignment:
Q  385 ttttaaatatctttttagaaaattaacacaaaaat-agcgatgtgtatttttgcacattttc 445  Q
    |||||||| |||||||| ||||||||||| ||| | | ||||||||||||||| ||||||||    
T  42735019 ttttaaatgtctttttaaaaaattaacaccaaattaaacgatgtgtatttttgtacattttc 42735080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 14124241 - 14124134
Alignment:
Q  77 aataattgtttaagatattacaataaacaatgttcacattctaaaaaagcgttacaccttgtatcgtgaatttccgcgaaaaatgattttgcttgatata 176  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||  ||  ||||||||| |||||||  ||||||||||||||  ||||||||     
T  14124241 aatacttgtttaagatattacaataaacaatggtcacattctaaaaaagcaatatgccttgtatcatgaattttagcgaaaaatgatttcacttgatatt 14124142  T
Q  177 gcaacgcc 184  Q
    ||||||||    
T  14124141 gcaacgcc 14124134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 383 - 455
Target Start/End: Original strand, 17201877 - 17201949
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  17201877 ctttttaagtgtctttttagaaaattaacataaaaatagcgatgtgtatttttgcacattttcttcctattat 17201949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 39585344 - 39585424
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| | |||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  39585344 ctccgttcctttttaagtgtctttttagaaaattaacaccaaaatagcgacgtgtatttttgcacattttcttcctattat 39585424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 28620674 - 28620596
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| | ||||||||||||||||||||  ||||| |||||||||||||||||| |||||| ||||||||    
T  28620674 ctccgttcctttttaagtgtctttttagaaaattaacac--aaataacgatgtgtatttttgcaccttttcttcctattat 28620596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 455
Target Start/End: Complemental strand, 1584321 - 1584249
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| | |||||||| ||||||||||| ||| ||||||||||||||||||||||||||||  |||||||    
T  1584321 ctttttaagtgtctttttaaaaaattaacaccaaattagcgatgtgtatttttgcacattttctttctattat 1584249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 455
Target Start/End: Complemental strand, 6428705 - 6428634
Alignment:
Q  384 tttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| | |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||  |||||||    
T  6428705 tttttaagtgtcttttaagaaaattaacaccaaaatagtgatgtgtatttttgcacattttctttctattat 6428634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 385 - 455
Target Start/End: Complemental strand, 1584132 - 1584062
Alignment:
Q  385 ttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||| |||||||||| ||||| ||||  ||| |||||||||||||||||||||||||||| ||||||||    
T  1584132 ttttaagtatctttttaaaaaataaacatcaaattagcgatgtgtatttttgcacattttcttcctattat 1584062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 19804380 - 19804311
Alignment:
Q  384 tttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctatt 453  Q
    ||||||| | |||||||||||||||||||| ||| |||| ||||||||||||| ||||||||| ||||||    
T  19804380 tttttaagtgtctttttagaaaattaacactaaattagcaatgtgtatttttgtacattttcttcctatt 19804311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 379 - 455
Target Start/End: Complemental strand, 32474797 - 32474721
Alignment:
Q  379 gtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||| |||||| |||||||| ||||||||| ||  ||||||||||| ||||||||||||||||||||  |||||||    
T  32474797 gtttcattttaagtatcttttaagaaaattaccatcaaaatagcgatttgtatttttgcacattttctttctattat 32474721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 455
Target Start/End: Original strand, 12436151 - 12436207
Alignment:
Q  399 ttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||| | ||||||    
T  12436151 ttagaaaattaacaccaaaataatgatgtgtatttttgcacattttcttcatattat 12436207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 20202314 - 20202234
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| | || ||||| ||  |||||||||||||||| | ||||||||||||||||||| | ||||||||    
T  20202314 ctccgttcctttttaagtgtcgttttaaaattttaacacaaaaatagctaagtgtatttttgcacatttttttcctattat 20202234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 25612737 - 25612785
Alignment:
Q  407 ttaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||||||||    
T  25612737 ttaacaccaaattagcgatgtgtatttttgcacattttcttcctattat 25612785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 451
Target Start/End: Complemental strand, 37270197 - 37270129
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgccta 451  Q
    |||||||| | || ||||||||||||  |||||||||||| | ||||||||||||||||||||| ||||    
T  37270197 ctttttaagtgtcgttttagaaaatttccacaaaaatagcaaagtgtatttttgcacattttcttccta 37270129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 17558447 - 17558382
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcaca 440  Q
    |||||||| ||||||| | || ||||||||  |||||||||||||||||| |||||||||| ||||    
T  17558447 ctccgtttttttttaagtgtcgttttagaattttaacacaaaaatagcgaagtgtatttttacaca 17558382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 455
Target Start/End: Original strand, 248895 - 248967
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| | || ||||||||||||  || ||||||||| | |||||||||| |||||||||| ||||||||    
T  248895 ctttttaagtgtcgttttagaaaatttccataaaaatagcaaagtgtatttttacacattttcttcctattat 248967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 455
Target Start/End: Complemental strand, 14655431 - 14655383
Alignment:
Q  407 ttaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||||||||||||| ||||||||||||||| ||| | ||||||||    
T  14655431 ttaacacaaaaatagcgaagtgtatttttgcacacttttttcctattat 14655383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 451
Target Start/End: Original strand, 11991712 - 11991747
Alignment:
Q  416 aaatagcgatgtgtatttttgcacattttctgccta 451  Q
    ||||||||||||||||||||||||||||||| ||||    
T  11991712 aaatagcgatgtgtatttttgcacattttcttccta 11991747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 11825179 - 11825229
Alignment:
Q  384 tttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttt 434  Q
    ||||||| | || |||||||||||||| ||||||||||||| |||||||||    
T  11825179 tttttaagtgtcgttttagaaaattaatacaaaaatagcgaagtgtatttt 11825229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 455
Target Start/End: Original strand, 36059566 - 36059623
Alignment:
Q  398 tttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||  ||||||||||||||| || |||||||||| |||||||| | ||||||||    
T  36059566 tttagaattttaacacaaaaatagtgaagtgtattttttcacatttttttcctattat 36059623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 455
Target Start/End: Original strand, 8544148 - 8544200
Alignment:
Q  403 aaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||||||| ||| || | ||||||||||||||||||||||| | ||||||    
T  8544148 aaaattaacaccaaattaacaatgtgtatttttgcacattttcttcatattat 8544200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 455
Target Start/End: Original strand, 32717603 - 32717674
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| | || ||||||||  |||||||||||||||||| ||||| ||||||||| ||| | ||||||||    
T  32717603 ctttttaagtgtcgttttagaattttaacacaaaaatagcgaagtgta-ttttgcacacttttttcctattat 32717674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 9088737 - 9088817
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||    
T  9088737 ctccgttcctttttaagtatctttttagaacattaacactaaaatagcgatgtgtattcttgcacattttcttcctattat 9088817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 383 - 455
Target Start/End: Original strand, 1821071 - 1821143
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| | |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  1821071 ctttttaagtgtctttttaaaaaattaacaccaaaatagcgatgtgtatttttgcacattttcttcctattat 1821143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 17331046 - 17330966
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| ||||| || | |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  17331046 ctccgttccttttgaagtgtctttttagaaaattaacaccaaaatagcaatgtgtatttttgcacattttcttcctattat 17330966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 384 - 454
Target Start/End: Complemental strand, 49263689 - 49263619
Alignment:
Q  384 tttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctatta 454  Q
    ||||||| | |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||    
T  49263689 tttttaagtgtctttttagaaaattaacaccaaaatagcgaagtgtatttttgcacattttcttcctatta 49263619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 452
Target Start/End: Original strand, 37209536 - 37209613
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctat 452  Q
    ||||||| |||||||| | |||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||    
T  37209536 ctccgttcctttttaagtgtctttttagaaaattaccaccaaaatagcgatgtgtatttttgtacattttcttcctat 37209613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 455
Target Start/End: Complemental strand, 45666932 - 45666855
Alignment:
Q  378 cgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||||| ||| | |||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||    
T  45666932 cgtttctttataagtgtctttttaaaaaattcacaccaaaatagcgatgtgtatttttgcacattttcttcctattat 45666855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 394 - 455
Target Start/End: Original strand, 47943971 - 47944032
Alignment:
Q  394 tctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  47943971 tctttttaaaaaattaacaccaaaatagcgatgtgtatttttgcacattttcttcctattat 47944032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 49299320 - 49299381
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacatttt 444  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49299320 ctttttaagtgtctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacttttt 49299381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 9808245 - 9808167
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||    
T  9808245 ctccgttcctttttaaatgtctttt-agaaaattaacaccaaaatagcgatgtgtattttt-cacattttcttcctattat 9808167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 375 - 446
Target Start/End: Original strand, 38044238 - 38044309
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttct 446  Q
    |||||||||||||||| | | |||||| |||||||||| ||||||||| |||||||||||||||||||||||    
T  38044238 ctccgtttctttttaagtgtttttttaaaaaattaacataaaaatagcaatgtgtatttttgcacattttct 38044309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 19443038 - 19443118
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| | ||||||||||||||||| || || ||| |||||| |||||||||||||||||| ||||||||    
T  19443038 ctccgttcctttttaagtgtctttttagaaaattaataccaagataacgatgtatatttttgcacattttcttcctattat 19443118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 50721563 - 50721483
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||||||||||| |||  ||||| ||||||||||| |||||||| |||| |||||||| ||||||||| ||||||||    
T  50721563 ctccgtttctttttaagtattattttaaaaaattaacaccaaaatagcaatgtatatttttgtacattttcttcctattat 50721483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 396 - 455
Target Start/End: Original strand, 34031481 - 34031540
Alignment:
Q  396 tttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||||||||||| || ||||||| |||||||||||||||||||||||| ||||||||    
T  34031481 tttttagaaaattaagaccaaaatagtgatgtgtatttttgcacattttcttcctattat 34031540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 53393979 - 53393929
Alignment:
Q  396 tttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttct 446  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  53393979 tttttagaaaattaacacaaaactagcgaggtgtatttttgcacattttct 53393929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 455
Target Start/End: Complemental strand, 6949642 - 6949565
Alignment:
Q  378 cgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||| |||||||| | | |||||||||||||||||| ||| || ||||||||||||||| ||||||||| ||||||||    
T  6949642 cgttcctttttaagtgtatttttagaaaattaacaccaaattaacgatgtgtatttttgtacattttcttcctattat 6949565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 25494373 - 25494312
Alignment:
Q  394 tctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||||||| ||| ||||||||    
T  25494373 tctttttagaaaattaacaccaaattagcgatgtgcatttttgcacattgtcttcctattat 25494312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 46196590 - 46196529
Alignment:
Q  394 tctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||    
T  46196590 tctttttataaaattaacaccaaaatagcgaggtgtatttttgcatattttcttcctattat 46196529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 46430393 - 46430472
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctatta 454  Q
    ||||||||  |||||| | |||||||| ||||||||||| |||||| ||||||||||||||| | ||||||| |||||||    
T  46430393 ctccgttttcttttaagtgtctttttaaaaaattaacaccaaaataacgatgtgtatttttgaatattttcttcctatta 46430472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 54982157 - 54982228
Alignment:
Q  384 tttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| | |||||||||||||||||||  ||||||| ||||||||||||||||| ||||||  |||||||    
T  54982157 tttttaagtgtctttttagaaaattaacatcaaaatagtgatgtgtatttttgcacgttttctttctattat 54982228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 24073344 - 24073401
Alignment:
Q  394 tctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgccta 451  Q
    |||| ||||||||||||||| |||||||| | ||||||||||||||||||||| ||||    
T  24073344 tcttcttagaaaattaacaccaaaatagcaaagtgtatttttgcacattttcttccta 24073401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 38839889 - 38839969
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| | | |||| | ||| ||||||| |||| |||||||| ||||||||||||||||||  |||||||    
T  38839889 ctccgttcctttttaagtgttttttaaaaaacttaacaccaaaacagcgatgtatatttttgcacattttctttctattat 38839969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 55344204 - 55344144
Alignment:
Q  384 tttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacatttt 444  Q
    ||||||| | || ||||||||  ||||||||||||||||||  ||||||||||||||||||    
T  55344204 tttttaagtgtcgttttagaattttaacacaaaaatagcgaaatgtatttttgcacatttt 55344144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 24537904 - 24537961
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcaca 440  Q
    |||||||| | || ||||||||  |||||| ||||||||||| |||||||||||||||    
T  24537904 ctttttaagtgtcgttttagaattttaacataaaaatagcgaagtgtatttttgcaca 24537961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 41503151 - 41503110
Alignment:
Q  414 aaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||||| | ||||||||||||||||||||| ||||||||    
T  41503151 aaaaatagcaaagtgtatttttgcacattttcttcctattat 41503110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 37371013 - 37371073
Alignment:
Q  376 tccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttg 436  Q
    |||||| |||||||| | || ||||||||  ||||||||||||||| || |||||||||||    
T  37371013 tccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgtatttttg 37371073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 456 - 517
Target Start/End: Complemental strand, 24478703 - 24478642
Alignment:
Q  456 cactactacagaaataaattttcacatcagttggaaactacttttcacatcagatggaaact 517  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||    
T  24478703 cactactacagaaataagttttcacatcagttagaaactacttttcacatcagatggcaact 24478642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 8049989 - 8049909
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||  | |||||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||    
T  8049989 ctccgttcctttttatgtgtctttttaaaaaattaacaccaaaatagcgatgtgtgtttttgcacattttcttcctattat 8049909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 456 - 508
Target Start/End: Complemental strand, 27966368 - 27966316
Alignment:
Q  456 cactactacagaaataaattttcacatcagttggaaactacttttcacatcag 508  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  27966368 cactactacagaaataagttttcacatcagttgaaaactacttttcacatcag 27966316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 573
Target Start/End: Complemental strand, 24478557 - 24478505
Alignment:
Q  521 tttttcccactgatgtgatacgttctttttaaaatttaatatcagggttttca 573  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||||||||||    
T  24478557 ttttttccactgatgtgatacattctttttaaaatttaagatcagggttttca 24478505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 14093211 - 14093281
Alignment:
Q  384 tttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| ||||| ||||||| ||| |||| ||||||||||||||||||||||| ||||||||    
T  14093211 tttttaagtatctttt-agaaagttaacaccaaattagcaatgtgtatttttgcacattttcttcctattat 14093281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 6026668 - 6026588
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| | || |||||||| ||||||||||||||||| | |||||| ||||||| ||||||  |||||||    
T  6026668 ctccgttcctttttaagtgtcgttttagaatattaacacaaaaatagcaaagtgtatgtttgcactttttctttctattat 6026588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 7972249 - 7972314
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcaca 440  Q
    |||||||||||||||| |  | ||||||||  |||||||||||||| ||| |||||||||||||||    
T  7972249 ctccgtttctttttaagtgacgttttagaattttaacacaaaaataacgaagtgtatttttgcaca 7972314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 21526911 - 21526990
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctatta 454  Q
    ||||||| |||||||| | || ||||||||  ||||  |||||||||||| ||||||||||||||| ||| | |||||||    
T  21526911 ctccgttcctttttaagtgtcgttttagaattttaaatcaaaaatagcgaagtgtatttttgcacacttttttcctatta 21526990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 453
Target Start/End: Original strand, 34131974 - 34132044
Alignment:
Q  383 ctttttaaatatctttt-tagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctatt 453  Q
    |||||||||||| |||| |||||||||||||||||||||| |||| || ||||||  |||||||| ||||||    
T  34131974 ctttttaaatattttttttagaaaattaacacaaaaatagagatgcgtttttttg-tcattttcttcctatt 34132044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 455
Target Start/End: Original strand, 26251998 - 26252080
Alignment:
Q  373 tactccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||||| |||||||| | || ||||||||||||  ||  |||||||  | ||||||||||| ||||||||| ||||||||    
T  26251998 tactccgttcctttttaagtgtcgttttagaaaatttccatgaaaatagtaaagtgtatttttgtacattttcttcctattat 26252080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 29408324 - 29408401
Alignment:
Q  378 cgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||| |||||||||| | |||||||||||||||||| |||||| |||||||||||||||||||||||||  |||||||    
T  29408324 cgttcctttttaaatgtttttttagaaaattaacaccaaaataacgatgtgtatttttgcacattttctttctattat 29408401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 396 - 455
Target Start/End: Complemental strand, 1398088 - 1398029
Alignment:
Q  396 tttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||    
T  1398088 tttttagaaaattaacaccaaaatagcgatgtgtatttttgcacattttcttccaattat 1398029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 455
Target Start/End: Original strand, 16806034 - 16806106
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| | ||||||||||||||||| || ||||||| ||||||||||||||||| |||||| ||||||||    
T  16806034 ctttttaagtgtctttttagaaaattaaaaccaaaatagtgatgtgtatttttgcacgttttcttcctattat 16806106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 455
Target Start/End: Original strand, 16845315 - 16845387
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| | ||||||||||||||||| || ||||||| ||||||||||||||||| |||||| ||||||||    
T  16845315 ctttttaagtgtctttttagaaaattaaaaccaaaatagtgatgtgtatttttgcacgttttcttcctattat 16845387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 455
Target Start/End: Original strand, 3309418 - 3309479
Alignment:
Q  394 tctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||||||||||||||  |||| | ||||||||||||||||||||||||| ||||||||    
T  3309418 tctttttagaaaattaacatcaaaacaacgatgtgtatttttgcacattttcttcctattat 3309479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 456 - 508
Target Start/End: Original strand, 8355845 - 8355897
Alignment:
Q  456 cactactacagaaataaattttcacatcagttggaaactacttttcacatcag 508  Q
    ||||||||||||||| | |||| |||||||||||||| |||||||||||||||    
T  8355845 cactactacagaaatgagtttttacatcagttggaaagtacttttcacatcag 8355897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 20170904 - 20170984
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| || ||||| | || |||||||| |||||||   ||||||||| ||||||||||||||||||||| ||||||||    
T  20170904 ctccgttcctctttaagtgtcgttttagaatattaacattgaaatagcgaagtgtatttttgcacattttcttcctattat 20170984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 446
Target Start/End: Complemental strand, 33660754 - 33660684
Alignment:
Q  376 tccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttct 446  Q
    |||||| |||||||| | || |||||||| ||||| ||||||||||| | |||||||||||||| ||||||    
T  33660754 tccgttcctttttaagtgtcgttttagaatattaatacaaaaatagcaaagtgtatttttgcaccttttct 33660684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 455
Target Start/End: Complemental strand, 12413086 - 12413014
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| | || ||||||||  |||||||||||| ||||| ||||||||||||||| ||| | ||||||||    
T  12413086 ctttttaagtgtcgttttagaattttaacacaaaaaaagcgaagtgtatttttgcacacttttttcctattat 12413014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 455
Target Start/End: Complemental strand, 12425146 - 12425074
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| | || ||||||||  |||||||||||| ||||| ||||||||||||||| ||| | ||||||||    
T  12425146 ctttttaagtgtcgttttagaattttaacacaaaaaaagcgaagtgtatttttgcacacttttttcctattat 12425074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 522 - 564
Target Start/End: Original strand, 8355992 - 8356034
Alignment:
Q  522 ttttcccactgatgtgatacgttctttttaaaatttaatatca 564  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||    
T  8355992 ttttcccactgatgtgatatgttctctttaaaatttaagatca 8356034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 452
Target Start/End: Original strand, 42871902 - 42871971
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctat 452  Q
    |||||||| | || |||||||| | |||||  |||||||||| ||||||||||||| ||||||| |||||    
T  42871902 ctttttaagtgtcgttttagaatactaacatcaaaatagcgaagtgtatttttgcatattttcttcctat 42871971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 34424369 - 34424433
Alignment:
Q  376 tccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcaca 440  Q
    |||||| |||||||| | || ||||| ||  |||||||||||||||||| |||||||||| ||||    
T  34424369 tccgttcctttttaagtgtcgttttaaaattttaacacaaaaatagcgaagtgtatttttacaca 34424433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 41541801 - 41541721
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||| ||||||||||| | |  |||||||| |||||||| |||||| | | ||||| ||||||| ||||||| ||||||||    
T  41541801 ctccatttctttttaattgttgttttagaatattaacaccaaaataacaaagtgtacttttgcatattttcttcctattat 41541721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 455
Target Start/End: Complemental strand, 1395 - 1323
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| |||||||||| ||||||||||| | |||||| ||||||||||||| ||||||||| ||||||||    
T  1395 ctttttaagtatctttttaaaaaattaacaccagaatagcaatgtgtatttttgtacattttcttcctattat 1323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 32234318 - 32234238
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||| |||||||| | | ||||||||||||| |||  |||||||||||||||||||||| ||||||||| ||||||||    
T  32234318 ctccgttcctttttaagtgtttttttagaaaatttacatcaaaatagcgatgtgtatttttgtacattttcttcctattat 32234238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 376 - 452
Target Start/End: Original strand, 35970069 - 35970145
Alignment:
Q  376 tccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctat 452  Q
    |||||| |||||||| |||| |||||||| |||||||| ||| |||| | ||||||||||||||||||||| |||||    
T  35970069 tccgttcctttttaactatcgttttagaatattaacaccaaattagcaaagtgtatttttgcacattttcttcctat 35970145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 455
Target Start/End: Original strand, 1256235 - 1256307
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| | ||||||||||||||||||||  || ||||  |||||||||||||||||||| | ||||||||    
T  1256235 ctttttaagtgtctttttagaaaattaacaccgaattagcattgtgtatttttgcacattttttccctattat 1256307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 9455712 - 9455647
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcaca 440  Q
    |||||||||||||||| | || ||||| ||  |||||||||||||||| | |||||||||||||||    
T  9455712 ctccgtttctttttaagtgtcattttaaaattttaacacaaaaatagcaaagtgtatttttgcaca 9455647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 443
Target Start/End: Complemental strand, 38402161 - 38402097
Alignment:
Q  378 cgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattt 443  Q
    |||| |||||||| | |||||||||||| ||||||  |||||||| ||||||||||||||||||||    
T  38402161 cgttcctttttaagtgtctttttagaaa-ttaacatcaaaatagcaatgtgtatttttgcacattt 38402097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 3443332 - 3443375
Alignment:
Q  397 ttttagaaaattaacacaaaaatagcgatgtgtatttttgcaca 440  Q
    ||||||||  |||||||||||||||||| |||||||||||||||    
T  3443332 ttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 3443375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 446
Target Start/End: Complemental strand, 27232303 - 27232232
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttct 446  Q
    ||||||| |||||||| | | |||||||||||||||  | ||| |||||||||||| ||||| |||||||||    
T  27232303 ctccgttcctttttaagtgtttttttagaaaattaaacccaaattagcgatgtgtacttttgtacattttct 27232232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 34039501 - 34039438
Alignment:
Q  383 ctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttct 446  Q
    |||||||||| || ||||||||  ||||||||||||||  || |||||||||| ||||||||||    
T  34039501 ctttttaaatgtcgttttagaattttaacacaaaaataatgaagtgtatttttacacattttct 34039438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 36683524 - 36683466
Alignment:
Q  397 ttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    ||||||||||||  ||  |||||||| | ||||||||||||||||||||| ||||||||    
T  36683524 ttttagaaaatttccatgaaaatagcaaagtgtatttttgcacattttcttcctattat 36683466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 446
Target Start/End: Complemental strand, 3742362 - 3742293
Alignment:
Q  377 ccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttct 446  Q
    ||||| |||||| ||| || |||| |||||||  |||||||||| | | |||||||||||||||||||||    
T  3742362 ccgttccttttttaatgtcgttttcgaaaatttccacaaaaataacaaagtgtatttttgcacattttct 3742293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 455
Target Start/End: Original strand, 7694904 - 7694965
Alignment:
Q  394 tctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||| ||||||||||| ||| || | || ||| |||||||||||||||| ||||||||    
T  7694904 tctttttaaaaaattaacactaaattaacaatatgtgtttttgcacattttcttcctattat 7694965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 29315227 - 29315307
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||  ||||||| | || ||||||||||||  ||  |||||||| | |||||| |||||||||||||| ||||||||    
T  29315227 ctccgttcttttttaagtgtcgttttagaaaatttccatgaaaatagcaaagtgtatatttgcacattttcttcctattat 29315307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 257386 - 257335
Alignment:
Q  404 aaattaacacaaaaatagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||||| ||||||||||||||||||||| |||||||||| ||||||||    
T  257386 aaattaacacgaaaatagcgatgtgtatttttacacattttcttcctattat 257335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1986 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1986
Description:

Target: scaffold1986; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 775 - 693
Alignment:
Q  375 ctccgtttctttttaaatatctttttagaaaattaacacaaaa--atagcgatgtgtatttttgcacattttctgcctattat 455  Q
    |||||||  |||||||| ||||||||| ||||||||||  |||  ||||||||||||| |||| ||||||||||  |||||||    
T  775 ctccgttcgtttttaaacatctttttaaaaaattaacatcaaattatagcgatgtgtacttttacacattttctttctattat 693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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