View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6222_low_10 (Length: 278)
Name: NF6222_low_10
Description: NF6222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6222_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 4688985 - 4688776
Alignment:
| Q |
10 |
aagaatatagtggacatgtacctccattttcaaattgatgcaccgtaaagtgcagctgcaaggagtacacttatatttatttaagtgcgtaaatagaaaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4688985 |
aagaatatagtggacatgtacctccattttcaaattgatgcaccgtaaagtgcagctgcaaggagtacacttatatttatttaagtgcgtaaatagaaaa |
4688886 |
T |
|
| Q |
110 |
cgtagcccacaaagctaagtgctaatgctatatatgattaaatacagctttaatcatagaccctttacatctcaactaatcaaaataatatagtatgaat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4688885 |
cgtagcccacaaagctaagtgctaatgctatatatgattaaatacagctttaatcatagaccctttacatctcaactaatcaaaataatatagtatgaat |
4688786 |
T |
|
| Q |
210 |
ttatttttta |
219 |
Q |
| |
|
|||||||||| |
|
|
| T |
4688785 |
ttatttttta |
4688776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University