View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6222_low_3 (Length: 489)
Name: NF6222_low_3
Description: NF6222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6222_low_3 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 474
Target Start/End: Complemental strand, 3570 - 3101
Alignment:
| Q |
11 |
caaaggcatgtcaaatgatgatcttgatgacgacgacgacgaagatgaatggtttccaagggcagtggaggagtatgaagagtataaccatgctgcaaga |
110 |
Q |
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| T |
3570 |
caaaggcatgtcaaatgatgatcttgatgacgacgacgatgatgatgaatggtttccaagggcagtggaggagtatgaagagtataaccatgctgcaaga |
3471 |
T |
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| Q |
111 |
actggacaacatcggctacggtcgagtttagtattagaaccatgttttgatgaactacatgcactttctatgccattgaagagttcatttgagagagata |
210 |
Q |
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| T |
3470 |
atcggacaacatcggctacggtcgagtttactattagaaccatgttttgatgaactacatgcactttctatgccattgaagagttcatttgagagagata |
3371 |
T |
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| Q |
211 |
aaggacagcctttaacatatgactgttcttggaatgaagggattgttaatgttgttgggaaaatgggattaagggttgatgatgttgagttaggatgagt |
310 |
Q |
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| T |
3370 |
aaggacagcctttaacataagactgttcttggaatgaagggattgttaatgttgttgggaaaatgggattaagggttgatgatgttgagttaggatgagt |
3271 |
T |
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| Q |
311 |
gagactcatgtaggaagggaagaagagaatgtagaggaaaaggatcattagatatggaagtgga------agtgataatgacatgatggtgttgaaggtc |
404 |
Q |
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| T |
3270 |
gagactcatgtaggaagggaagaagagaatgtagaggaaaaggatcatttgatatggaagtggaagtggaagtgataatgacatgatggtgttgaaggtc |
3171 |
T |
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| Q |
405 |
taagatgatgagaatggaaggaaagtgcactttttcttgtgataaagaatcaagagtctaagttatatat |
474 |
Q |
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| T |
3170 |
taagatgatgagaatggaaggaaagtgcactttttcttgtgataaagaatcaagagtctaagttatatat |
3101 |
T |
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