View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6222_low_4 (Length: 391)
Name: NF6222_low_4
Description: NF6222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6222_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 39681872 - 39682235
Alignment:
| Q |
18 |
cgtccatagtcttccggtcttggcacctaattcccacctttgcacctaatcaagaatcgtcacaataacatacacacatcaatcataagaaaacattaaa |
117 |
Q |
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| T |
39681872 |
cgtccatagtcttccggtcttggcacctaattcccacctttgcacctaatcaagaatcgtcacaataacatacacacatcaatcataagaaaacgttaaa |
39681971 |
T |
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| Q |
118 |
ttagaaatgatttgattcgtatatgcaaacggtgcaaacctttttacactaaggtgtaaaaagtgatatgtttaaaaacgtacacctaatcatgtgtaaa |
217 |
Q |
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| T |
39681972 |
ttagaaatgatttgattcgtatatgcaaacggtgcaaacctttttacactaaggtgtaaaaagtgatatgtttaaaaacgtacacctaatcaggtgtaaa |
39682071 |
T |
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| Q |
218 |
acatacacctgatcattaaaatgtttgacttcaatcatagacagtctaaaaactttttacgctaaggtgtatacaaagtgatgtgtatgtatgtaccttg |
317 |
Q |
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| T |
39682072 |
acatacacctgatcattaaaatgtttgacttcaatcgtagacagtgtaaaaactttttacgctaaggtgtatagaaagtgatgtgtatatatgtaccttg |
39682171 |
T |
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| Q |
318 |
gatgtaaaatgtggcgttggtttcgaatccagcacggcaagtatcacaataaacgcaacctttg |
381 |
Q |
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| T |
39682172 |
gatgtaaaatgtggcgttggtttcgaatccagcacggcaagtatcacaataaacgcaacctttg |
39682235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 27032076 - 27032048
Alignment:
| Q |
228 |
gatcattaaaatgtttgacttcaatcata |
256 |
Q |
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| T |
27032076 |
gatcattaaaatgtttgacttcaatcata |
27032048 |
T |
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