View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6222_low_6 (Length: 366)
Name: NF6222_low_6
Description: NF6222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6222_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 9 - 366
Target Start/End: Original strand, 29131885 - 29132242
Alignment:
| Q |
9 |
agcagagaatcctacaaacatatactcattcagataaggtgacagatccataaactccgagaaaataggcttagtaggataaacatcttgattagcaagt |
108 |
Q |
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| T |
29131885 |
agcagagaatcctacaaacatatactcattcagataaggtgaaagatccataaactccgagaaaataggcttagtaggataaacatcttgattagcaagt |
29131984 |
T |
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| Q |
109 |
cctaaacgaatgtcaattcgtcttcgaggaccatcataatcaatccaagcatggtgaacaaaaccatccttaagagaaactccaatatctgaaacattga |
208 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29131985 |
cctaaacgaatgtcaattcgtctttgaggaccatcataatcaatccaagcatggtgaacaaaaccatccttaagagaaactccaatatctgaaacattga |
29132084 |
T |
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| Q |
209 |
taattttagtagatactatgctacctaaatttataccaacatggttgtcatttggatcaccgaattctggattttctcgtgtatcaaactcaattgcaac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29132085 |
taattttagtagatactatgctacctaaatttataccaacatggttatcatttggatcaccgaattctggattttctcgtgtatcaaactcaattgcaac |
29132184 |
T |
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| Q |
309 |
agctttataatcgctctcgcaagcatcattaagcataccaagcaaaggtaatggcctt |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
29132185 |
ggctttataatcgctctcgcaagcatcattaagcataccaagccaaggtcctggcctt |
29132242 |
T |
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