View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6222_low_7 (Length: 359)
Name: NF6222_low_7
Description: NF6222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6222_low_7 |
 | |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
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|
Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 40 - 359
Target Start/End: Original strand, 44306588 - 44306907
Alignment:
| Q |
40 |
agtaggaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctcca |
139 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44306588 |
agtaggaacatcggcagaagtcattgtatatctaacagacccatcagtaaaagtatctccagatttaagaagagcatcgaacaacataacaatttctcca |
44306687 |
T |
|
| Q |
140 |
gcatgagcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcat |
239 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44306688 |
gcatgagcttcatcaacatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcat |
44306787 |
T |
|
| Q |
240 |
ccttcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatact |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44306788 |
ccttcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatact |
44306887 |
T |
|
| Q |
340 |
tccagacaattcaattttct |
359 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
44306888 |
tccagacaattcaattttct |
44306907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 43 - 359
Target Start/End: Original strand, 43896137 - 43896453
Alignment:
| Q |
43 |
aggaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagca |
142 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||| ||||||||| |
|
|
| T |
43896137 |
aggaacatcggcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaatagcatctaacacaataataatctctccagca |
43896236 |
T |
|
| Q |
143 |
tgagcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcatcct |
242 |
Q |
| |
|
|||||||||||| | | |||||||| |||||||||||||||| |||| | ||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
43896237 |
tgagcttcatcaacttcctcaatcttatcatcatgtctcttaaacaaacgaggaatctgaatcttcttaccagtgttaacatttgtaataaaatcaccct |
43896336 |
T |
|
| Q |
243 |
tcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttcc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| || | ||| |||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
43896337 |
tcttaataacaccctgatagattcttagataagttactaatccatcattcctaatcacatttgtgaaaacctttgcaacaaatggcgcatcaatgcttcc |
43896436 |
T |
|
| Q |
343 |
agacaattcaattttct |
359 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
43896437 |
agacaattcaactttct |
43896453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 40 - 359
Target Start/End: Original strand, 44301480 - 44301801
Alignment:
| Q |
40 |
agtaggaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctcca |
139 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | | | |||| |||||||||||||| |
|
|
| T |
44301480 |
agtaggaacatcggcagaagacattgtatatctaacagacccatcagtaaaagtatctccagatttaagaacaatagctaacacaataacaatttctccg |
44301579 |
T |
|
| Q |
140 |
gcatgagcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcat |
239 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44301580 |
gcatgagcttcatcaacaaactcaatcacatcatcatgtctcttagacaagctataaatctgaatcttctcaccagtgttaacatttgtaataaaatcac |
44301679 |
T |
|
| Q |
240 |
ccttcttaataacaccctgatagattcttagataagttaataag------tcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatc |
333 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| ||| ||||||| | | |||||||||| ||||||| |||||||||||||| |
|
|
| T |
44301680 |
ccttcttgataacaccctgatagattcttagacaagttaa-aagaatccatcactccaataca---aatttgtgaaaacctttgctacaaatggcgcatc |
44301775 |
T |
|
| Q |
334 |
aatacttccagacaattcaattttct |
359 |
Q |
| |
|
|| ||||||||||||||||| ||||| |
|
|
| T |
44301776 |
aacacttccagacaattcaactttct |
44301801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 45 - 359
Target Start/End: Original strand, 44312372 - 44312686
Alignment:
| Q |
45 |
gaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagcatg |
144 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| |||| | |||| | |||||||||||||||||| |
|
|
| T |
44312372 |
gaacatcggcagaagtcattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaacacaaaaacaatttctccagcatg |
44312471 |
T |
|
| Q |
145 |
agcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttc |
244 |
Q |
| |
|
|||||||||| | | || ||||| | ||| ||||||||||| ||| | |||||| |||||||| |||||||||||| ||||||||||||||| ||||| |
|
|
| T |
44312472 |
agcttcatcaacttccttaatcttaccataatgtctcttacccaaacaaggaatcttaatcttcttaccagtgttaacgtttgtaataaaatcacccttc |
44312571 |
T |
|
| Q |
245 |
ttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccag |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || | || ||||||||||| ||||||| ||||||||| |||||| |||||||| |
|
|
| T |
44312572 |
ttaataacaccctgatagattcttagataagttaataagtacctaatcctatacatatttgtgaaaacctttgctacaaatggctcatcaacacttccag |
44312671 |
T |
|
| Q |
345 |
acaattcaattttct |
359 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
44312672 |
acaattcaactttct |
44312686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 43895619 - 43895669
Alignment:
| Q |
54 |
cagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatt |
104 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43895619 |
cagaggtcattgaatatctaacagacccatcagcaaaagtatctccagatt |
43895669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 44306043 - 44306093
Alignment:
| Q |
54 |
cagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatt |
104 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
44306043 |
cagaggtcattgaatatctaacggacccatcagcaaaagtatctccagatt |
44306093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 43 - 359
Target Start/End: Original strand, 18701741 - 18702061
Alignment:
| Q |
43 |
aggaacatctgcagaagtcattgtatatctaacagacccat---cagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctcca |
139 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| | || |||||||||||||||| |||| ||||||| || | | ||||||||||||| |
|
|
| T |
18701741 |
aggaacatcagcagaagtcattgtatatctaacagacccattggcggtaaaagtatctccagattcaagatgagcatcaaaaacaaaaacaatttctcca |
18701840 |
T |
|
| Q |
140 |
gcatgagcttcatcagcatactcaatctcatcatcat-gtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatca |
238 |
Q |
| |
|
||||||||||||||| | | ||| || | || | | | ||||||| | ||| | ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18701841 |
gcatgagcttcatcaacttcctcgattttattaacttcgtctcttgcccaaacgaggaatctgaatcttcttaccagtgttaacatttgtaataaaatca |
18701940 |
T |
|
| Q |
239 |
tccttcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatac |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | | ||| | | | ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
18701941 |
cccttcttaataacaccctgatagattcttagataagttaatttgaaatacctctcatgccaatttgcaaaagcctttgcaacaaatggtgcatcaatac |
18702040 |
T |
|
| Q |
339 |
ttccagacaattcaattttct |
359 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
18702041 |
ttccagacaattcaactttct |
18702061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 43 - 280
Target Start/End: Original strand, 4084249 - 4084492
Alignment:
| Q |
43 |
aggaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaac---aaca---taacaatttct |
136 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| |||||| ||| |||| |||||| |||| |
|
|
| T |
4084249 |
aggaacatcggcagaagtcattgtatatctaatagacccgtcagtaaaagtatctccagatttaagaatagcatcaaactttaacacaataacaagttct |
4084348 |
T |
|
| Q |
137 |
ccagcatgagcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaat |
236 |
Q |
| |
|
|||||||||||||||||| | || |||| || ||||||||||||| |||| | |||||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
4084349 |
ccagcatgagcttcatcaactgccttaatcgtattatcatgtctcttaaacaaacgaggaatcttaatcttcttaccggtgttaacatttgtaataaaat |
4084448 |
T |
|
| Q |
237 |
catccttcttaataacaccctgatagattcttagataagttaat |
280 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4084449 |
cacccttcttgataacaccctgatagattcttagataagttaat |
4084492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 4084516 - 4084571
Alignment:
| Q |
304 |
tgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttct |
359 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||| |
|
|
| T |
4084516 |
tgtgaaagcctttccaacaaatggtgcatcaatacttccaaacaattcaactttct |
4084571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 53 - 359
Target Start/End: Complemental strand, 8159230 - 8158903
Alignment:
| Q |
53 |
gcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagcatgagcttcat |
152 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || |||||||||||||||| |||| ||||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
8159230 |
gcagaagtcattatatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcat |
8159131 |
T |
|
| Q |
153 |
------------------cagcatactcaatctcatcat---catgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaat |
231 |
Q |
| |
|
|| | | |||| ||||||||| || ||||||||| ||| | |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
8159130 |
caacttccttgattttatcaacttcctcactctcatcatgttcacgtctcttacccaaacgaggaatctcaatcttcttaccagtgttaacatttgtaat |
8159031 |
T |
|
| Q |
232 |
aaaatcatccttcttaataacaccctgatagattcttagataagttaa---taagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggc |
328 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| |||||||| ||| | |||| || | | || ||||||||||||||||||||| |
|
|
| T |
8159030 |
aaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatacatcct-atacca--agttacgaaagcctttgcaacaaatgga |
8158934 |
T |
|
| Q |
329 |
gcatcaatacttccagacaattcaattttct |
359 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
8158933 |
gcatcaatacttccagacaattcaactttct |
8158903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 35856802 - 35856724
Alignment:
| Q |
202 |
aatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaat |
280 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | || ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
35856802 |
aatcttctcaccagtgttaacattagtaataaaatccccttttctaataacgccctgatagattcttagatatgttaat |
35856724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 15040305 - 15040348
Alignment:
| Q |
56 |
gaagtcattgtatatctaacagacccatcagtgaaagtatctcc |
99 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
15040305 |
gaagtcattgtatatttaacagacccatcagtaaaagtatctcc |
15040348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 10541388 - 10541444
Alignment:
| Q |
212 |
ccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattctt |
268 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| ||| ||||||| |||||||||| |
|
|
| T |
10541388 |
ccagtgttatcatttgtaataaaatctcccttccgaatgacaccctcatagattctt |
10541444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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