View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6223_high_4 (Length: 263)

Name: NF6223_high_4
Description: NF6223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6223_high_4
NF6223_high_4
[»] chr5 (18 HSPs)
chr5 (47-206)||(14880848-14881007)
chr5 (174-263)||(8074453-8074542)
chr5 (169-263)||(2464666-2464760)
chr5 (180-263)||(18400198-18400281)
chr5 (168-263)||(28591146-28591241)
chr5 (174-263)||(4592863-4592952)
chr5 (174-263)||(546068-546156)
chr5 (174-263)||(40612691-40612780)
chr5 (174-263)||(21069291-21069380)
chr5 (169-263)||(18004635-18004729)
chr5 (197-259)||(32640313-32640375)
chr5 (169-263)||(2466806-2466900)
chr5 (197-259)||(19186256-19186318)
chr5 (182-250)||(9537033-9537101)
chr5 (199-259)||(19182977-19183037)
chr5 (192-263)||(25590451-25590521)
chr5 (209-263)||(544685-544739)
chr5 (235-263)||(14881010-14881038)
[»] chr8 (8 HSPs)
chr8 (174-263)||(32898477-32898566)
chr8 (174-251)||(10407628-10407705)
chr8 (174-263)||(35177397-35177486)
chr8 (174-259)||(41754000-41754085)
chr8 (174-263)||(35178836-35178925)
chr8 (169-259)||(41754831-41754920)
chr8 (168-260)||(1953005-1953096)
chr8 (191-263)||(45476181-45476253)
[»] chr7 (20 HSPs)
chr7 (169-263)||(43457454-43457548)
chr7 (168-263)||(35729118-35729213)
chr7 (174-263)||(30925040-30925129)
chr7 (174-263)||(44333141-44333230)
chr7 (174-263)||(44334481-44334570)
chr7 (174-259)||(48646051-48646136)
chr7 (174-263)||(48777258-48777347)
chr7 (169-263)||(48647475-48647569)
chr7 (170-262)||(12223732-12223824)
chr7 (180-263)||(35727707-35727790)
chr7 (169-263)||(45583681-45583775)
chr7 (174-263)||(7258277-7258366)
chr7 (182-263)||(10899105-10899186)
chr7 (174-263)||(46286505-46286594)
chr7 (165-259)||(7259720-7259814)
chr7 (169-263)||(8375615-8375709)
chr7 (174-263)||(42477383-42477471)
chr7 (184-249)||(8374926-8374991)
chr7 (170-251)||(21062815-21062896)
chr7 (174-263)||(48788704-48788793)
[»] chr2 (14 HSPs)
chr2 (167-262)||(17330263-17330358)
chr2 (174-263)||(31090166-31090255)
chr2 (174-263)||(31091559-31091648)
chr2 (174-263)||(32766271-32766360)
chr2 (174-263)||(32764940-32765029)
chr2 (174-263)||(2910102-2910191)
chr2 (180-263)||(24459478-24459561)
chr2 (174-263)||(39015007-39015096)
chr2 (174-259)||(24458062-24458147)
chr2 (175-263)||(34037705-34037793)
chr2 (174-263)||(7073641-7073730)
chr2 (214-263)||(14704048-14704097)
chr2 (180-263)||(40000366-40000449)
chr2 (174-263)||(5915024-5915113)
[»] chr6 (3 HSPs)
chr6 (174-259)||(30748001-30748086)
chr6 (180-263)||(31218963-31219046)
chr6 (180-258)||(31219197-31219275)
[»] chr3 (24 HSPs)
chr3 (174-258)||(2592044-2592128)
chr3 (174-263)||(2591629-2591718)
chr3 (174-263)||(17701951-17702040)
chr3 (174-263)||(55388075-55388164)
chr3 (169-263)||(17700515-17700609)
chr3 (174-263)||(36278954-36279043)
chr3 (174-263)||(52318349-52318438)
chr3 (169-263)||(52316976-52317070)
chr3 (174-263)||(48572987-48573076)
chr3 (174-263)||(48808366-48808457)
chr3 (180-262)||(33428468-33428550)
chr3 (169-259)||(34263802-34263892)
chr3 (169-263)||(53957672-53957765)
chr3 (203-259)||(11773087-11773143)
chr3 (180-263)||(45600971-45601053)
chr3 (216-263)||(48574491-48574538)
chr3 (181-263)||(20464078-20464160)
chr3 (174-247)||(19331110-19331183)
chr3 (174-259)||(55389505-55389590)
chr3 (180-263)||(47118083-47118166)
chr3 (174-263)||(19114535-19114624)
chr3 (174-263)||(19115179-19115267)
chr3 (194-263)||(47427882-47427951)
chr3 (211-263)||(36280349-36280401)
[»] scaffold0034 (1 HSPs)
scaffold0034 (174-263)||(116057-116146)
[»] chr1 (11 HSPs)
chr1 (168-263)||(32665802-32665897)
chr1 (186-263)||(7944169-7944246)
chr1 (174-263)||(7945586-7945675)
chr1 (174-263)||(9339648-9339737)
chr1 (169-263)||(10332983-10333077)
chr1 (195-263)||(9341057-9341125)
chr1 (174-263)||(10333218-10333307)
chr1 (169-250)||(52439476-52439557)
chr1 (174-263)||(52440591-52440680)
chr1 (167-255)||(5782409-5782497)
chr1 (174-263)||(6612421-6612510)
[»] chr4 (8 HSPs)
chr4 (174-263)||(42278051-42278140)
chr4 (174-263)||(47874566-47874655)
chr4 (165-259)||(31844715-31844809)
chr4 (180-263)||(53771081-53771164)
chr4 (174-259)||(47878520-47878605)
chr4 (174-253)||(42391930-42392009)
chr4 (175-263)||(26172974-26173062)
chr4 (197-263)||(54574450-54574516)
[»] scaffold0039 (2 HSPs)
scaffold0039 (175-259)||(74349-74433)
scaffold0039 (174-263)||(79075-79164)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 47 - 206
Target Start/End: Original strand, 14880848 - 14881007
Alignment:
Q  47 tgcgtagatttaaatttcaaatgctctaccatcatctatagttttatccgttcgctttgagagattaatctctacagttgcacaaatatgatatcggttn 146  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||     
T  14880848 tgcgtagatttaaatcttaaatgctctaccatcatctatagttttatccattcgctttgagagattaatctctacagttgcacaaatatgataccggtta 14880947  T
Q  147 nnnnnntgcacataattcttgaagagaaaataatcactttagtccctgattctgcaactc 206  Q
          |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14880948 aaaaaatgcacataattcttgaagagcaaataatcactttagtccctgattctgcaactc 14881007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 8074453 - 8074542
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||||||||||||| |||| ||| |||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||    
T  8074453 aaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcac 8074542  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 2464666 - 2464760
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| ||||| ||||||||||| ||||||||||| ||| |||||| |||||||||||||| | ||||||| |||||||||||||| |||||||||    
T  2464666 agagcaaatagtcactttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtccctaactctgcac 2464760  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 18400198 - 18400281
Alignment:
Q  180 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||| | ||| ||||| ||||||||||||    
T  18400198 tcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtcactgactctgcac 18400281  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 28591241 - 28591146
Alignment:
Q  168 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||| |||||||  ||||||| |||||| ||| ||||||||||||||| ||||| ||||||||| |||||||| |||||||||||||||    
T  28591241 aagagcaaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgcac 28591146  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 4592863 - 4592952
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||||||||||||| || | ||| |||||||||| |||| ||||| | ||||||| ||||||||||||||||||||||||    
T  4592863 aaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcac 4592952  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 546156 - 546068
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||||||||| |||| |||| ||| ||||||||||||||| ||||| ||||||||| ||| |||||||| |||||||||||    
T  546156 aaatagtcactttagtccc-gattttgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtccttgactctgcac 546068  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 40612780 - 40612691
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||||||||||||| |||| ||||||||||| ||||||| ||||| ||||||||| ||| |||  | |||||||||||||    
T  40612780 aaatagtcactttagtccctgattttgcagctcactgtcacgtaggtccctgactcaggattaaatacagatattttcctgactctgcac 40612691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 21069291 - 21069380
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||||||| |||| |||||| |||  ||||||| |||||  ||||| ||||||||| |||||||||||| |||||||||||    
T  21069291 aaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtccttgactctgcac 21069380  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 18004635 - 18004729
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| ||||||| |||||||||||||| |||||| |||||||||||| | ||| ||  |||||||||||| ||||| | |||  |||||||||||    
T  18004635 agagtaaataattactttagtccctgactctgcacctcactgtcacaaaagtctatagcttaggattaaatacaaagaggtctatgactctgcac 18004729  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 32640313 - 32640375
Alignment:
Q  197 tctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    |||||| |||||||||||||||| |||| ||| ||||||||| |||||||||||||| |||||    
T  32640313 tctgcacctcactgtcacataggaccataactcaggattaaatacaaataagtccctaactct 32640375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 2466900 - 2466806
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| ||||| ||||||| ||| |||| |||||| ||| || |||||||||||  ||| | ||||||||| | |||||||||||| |||||||||    
T  2466900 agagcaaatagtcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtccctaactctgcac 2466806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 19186318 - 19186256
Alignment:
Q  197 tctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    |||||| ||| | ||||||||||||| ||||||||||||||| ||||| ||||| ||||||||    
T  19186318 tctgcatctcccagtcacataggtccctgacttaggattaaatacaaacaagtctctgactct 19186256  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 9537033 - 9537101
Alignment:
Q  182 actttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtc 250  Q
    |||||||||||| | |||||| ||| ||||||||||||||  |||||||| |||||| ||||| |||||    
T  9537033 actttagtccctcactctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagtc 9537101  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 19182977 - 19183037
Alignment:
Q  199 tgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    |||| ||| ||||||||||||||  ||||| ||||||||| |||||||||| |||||||||    
T  19182977 tgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactct 19183037  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 25590451 - 25590521
Alignment:
Q  192 ctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| |||||| ||| ||||||||||||||| |||| | |||||||| ||||||||||| |||| |||||||    
T  25590451 ctgactctgcacctcgctgtcacataggtccctgac-tcggattaaatacaaataagtctctgattctgcac 25590521  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 544685 - 544739
Alignment:
Q  209 tgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||  ||||| ||||||||| ||||||||||| ||||||||||||    
T  544685 tgtcagataggtctctgactcaggattaaatacaaataagtcactgactctgcac 544739  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 14881010 - 14881038
Alignment:
Q  235 taaacacaaataagtccctgactctgcac 263  Q
    |||||||||||||||||||||||||||||    
T  14881010 taaacacaaataagtccctgactctgcac 14881038  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 32898566 - 32898477
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  32898566 aaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcac 32898477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 10407705 - 10407628
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtcc 251  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  10407705 aaatagtcactttagtctctgattctgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtcc 10407628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 35177397 - 35177486
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||| |||||||||| |||||||| ||| ||||||||||||||| |||||  |||||||| ||||||||||||||||||||||||    
T  35177397 aaatagtcaatttagtccctaattctgcagctcgctgtcacataggtccctgactccggattaaatacaaataagtccctgactctgcac 35177486  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 41754000 - 41754085
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    ||||| ||||||||||||||| ||||||| ||  ||||||||||||||| ||||| ||||||||| | ||| ||||||||||||||    
T  41754000 aaatagtcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtccctgactct 41754085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 35178925 - 35178836
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||| |||||||| ||||||  || |||||| || ||||| ||||| ||||||||| |||||||||||||||| |||||||    
T  35178925 aaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcac 35178836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 41754920 - 41754831
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    |||| ||||| |||||||| ||| |||||||||| ||| ||||||||||| ||  ||||| ||||||||| ||||| |||| |||||||||    
T  41754920 agagcaaatagtcactttaatcc-tgattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagttcctgactct 41754831  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 1953096 - 1953005
Alignment:
Q  168 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctg 260  Q
    ||||| ||||| ||||||||||||||||||||||| |||  ||||| |||| ||  |||| |||||||| | |||||||||||  ||||||||    
T  1953096 aagagtaaatagtcactttagtccctgattctgcagctcgttgtcatatagatctctgac-taggattacatacaaataagtctatgactctg 1953005  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 45476181 - 45476253
Alignment:
Q  191 cctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||||||| || ||| |||| | | |||||||||| | || |||||| ||||||||||| ||||||||||||    
T  45476181 cctgattcttcatctcgctgttagaaaggtccatgattcagaattaaatacaaataagtctctgactctgcac 45476253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 43457454 - 43457548
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||| ||||| ||||||||| ||||||||||||| ||||||||||    
T  43457454 agagaaaatagtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtccccgactctgcac 43457548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 35729213 - 35729118
Alignment:
Q  168 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||| |||||||| ||||||||| |||| ||| ||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||    
T  35729213 aagagcaaatagtcactttattccctgattttgcagctcgctgtcacataggtccttgacttaggattacatacaaataagtcactgactctgcac 35729118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 30925129 - 30925040
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||| |||||||||||||| ||| | ||||||||||||| ||||| ||||||||| ||||||||||| |||||| |||||    
T  30925129 aaatagtcactttaatccctgattctgcagctcccagtcacataggtccttgactcaggattaaatacaaataagtctctgactatgcac 30925040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 44333141 - 44333230
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||| |||||||| |||||| ||| ||||||||||||||| ||||| | ||||||| ||||||||||| ||||||||||||    
T  44333141 aaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcac 44333230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 44334570 - 44334481
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||||| |||||||||||| ||| |||| |||||||||| ||||| | ||||||| | ||||||||||||||||||||||    
T  44334570 aaatagtcactttagttcctgattctgcagctcgctgttacataggtccctgactcatgattaaatataaataagtccctgactctgcac 44334481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 48646051 - 48646136
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    ||||| ||||||| |||||||| | |||| ||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  48646051 aaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactct 48646136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 48777258 - 48777347
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||||||| ||||||||||| ||| |||||||||| |||| ||||| | ||||||| |||||||| |||||||||||||||    
T  48777258 aaatagtcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataattccctgactctgcac 48777347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 48647569 - 48647475
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| ||||| ||||||||| |||||||||| || ||| || |||||||||||| ||||| ||||||||| ||||||||||| || |||||||||    
T  48647569 agagcaaatagtcactttagaccctgattctacagctcgctatcacataggtccctgactcaggattaaatacaaataagtctctcactctgcac 48647475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 262
Target Start/End: Complemental strand, 12223824 - 12223732
Alignment:
Q  170 gagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgca 262  Q
    ||||||||  ||||||||||||||||  |||||  ||| |||||||||||||| ||||| ||||||||| | ||| |||||||||||||||||    
T  12223824 gagaaaatggtcactttagtccctgacactgcacatcaatgtcacataggtccctgactcaggattaaatataaagaagtccctgactctgca 12223732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 35727707 - 35727790
Alignment:
Q  180 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||||  ||||||| |||||| ||| ||||||||||||||| ||||| ||||||||| | ||||||||| ||||||||||||    
T  35727707 tcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcac 35727790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 45583681 - 45583775
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| ||||| |||||||||||||||||||||||  || || |||||||||||| ||||| || |||||| ||| |||||| ||||| |||||||    
T  45583681 agagcaaatagtcactttagtccctgattctgcagttcgctatcacataggtccctgactcagaattaaatacagataagttcctgattctgcac 45583775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 7258277 - 7258366
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||| |||||||| ||| || |||  |||||||||||||| | ||| ||||||||| ||||||||||| ||||||||||||    
T  7258277 aaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcac 7258366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 10899186 - 10899105
Alignment:
Q  182 actttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||| |||||| ||| ||||||||||| ||| ||||  ||||||||| ||||||||||| ||||||||||||    
T  10899186 actttggtccctgactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctgactctgcac 10899105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 46286505 - 46286594
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||||||||||| ||| || ||| |||| | | |||||| ||||| ||||||||| ||||||||||| ||||||||||||    
T  46286505 aaatagtcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctgactctgcac 46286594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 7259814 - 7259720
Alignment:
Q  165 ttgaagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    |||||||| ||||| |||||||| || |||||| || | ||| ||||||||| ||||  ||| | ||||||||| ||||||||||||||||||||    
T  7259814 ttgaagagtaaatagtcactttaatcgctgattttgtagctcgctgtcacatgggtctctgattcaggattaaatacaaataagtccctgactct 7259720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 8375709 - 8375615
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||| |||| ||||||||||| |  ||| | ||||||||||||||||| ||||| | ||||||| ||||| ||||  ||||||||||||    
T  8375709 agagataatagtcacattagtccctgacttcgcaccgcactgtcacataggtccctgactcatgattaaatacaaagaagtttctgactctgcac 8375615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 42477383 - 42477471
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||||||| ||| |||| ||| |||||| |||  |||| ||||||||  ||||| ||||||||| |||||||||| |||||||||||||    
T  42477383 aaataatcaatttggtccttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagt-cctgactctgcac 42477471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 8374926 - 8374991
Alignment:
Q  184 tttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagt 249  Q
    |||||||||||| |||||| ||| ||||||||||||||  ||||| || |||||| ||||| ||||    
T  8374926 tttagtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagt 8374991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 21062815 - 21062896
Alignment:
Q  170 gagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtcc 251  Q
    ||||||||  |||||||||||||||| | |||| ||| |||||| | |||||| ||||| ||||||||| ||| | ||||||    
T  21062815 gagaaaatggtcactttagtccctgactttgcacctcgctgtcataaaggtccttgactcaggattaaatacatagaagtcc 21062896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 48788793 - 48788704
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||  ||| ||| | |||| ||| ||||||||||||||| ||||| |  |||||| | ||||||||| ||||||||||||    
T  48788793 aaatagtcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgcac 48788704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 17330358 - 17330263
Alignment:
Q  167 gaagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgca 262  Q
    |||||| ||||| || ||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  17330358 gaagagcaaatagtcgctttagtccttgattctgcagctcactgtcacataggtccctgactcaggattaaatacaaataagtctctgactctgca 17330263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 31090166 - 31090255
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||| ||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||| | ||||||||| ||||||||||||    
T  31090166 aaatagtcaatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctgactctgcac 31090255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 31091648 - 31091559
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||| |||||||| |||||| ||  ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||    
T  31091648 aaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcac 31091559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 32766360 - 32766271
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||| |||||||| |||||| |||  |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||    
T  32766360 aaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcac 32766271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 32764940 - 32765029
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||||||||||||||||||| ||   ||||| |||||||  ||||| ||||||||| ||||||||||||||||||||||||    
T  32764940 aaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcac 32765029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 2910102 - 2910191
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||||||||||||||  ||||| |||| ||| ||||||||||| ||| |||||  |||||||| ||||||||||| ||||||||||||    
T  2910102 aaataatcactttagtctttgattttgcagctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctgactctgcac 2910191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 24459561 - 24459478
Alignment:
Q  180 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||||| |||||||| |||||| ||| ||||||||||||||| ||| | ||||||||| ||||||||||| ||||| ||||||    
T  24459561 tcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctgaccctgcac 24459478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 39015007 - 39015096
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||||||||||| |||||||| |||||| ||| ||| ||||||| ||| ||||| ||||||||| ||||||| |||  |||||||||||    
T  39015007 aaataatcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatacaaatacgtctttgactctgcac 39015096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 24458062 - 24458147
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    ||||| |||||||||||||||||| |||| ||| || |||||||||||| ||||| |  |||||| ||||||||||  ||||||||    
T  24458062 aaatagtcactttagtccctgattatgcagctcgctatcacataggtccctgactcaaaattaaatacaaataagtttctgactct 24458147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 34037793 - 34037705
Alignment:
Q  175 aataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| |||||||||||| ||| |||||| ||  |||||| | |||||||| ||| ||||||||| |||||||||||  |||||||||||    
T  34037793 aatagtcactttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtctatgactctgcac 34037705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 7073641 - 7073730
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||||||| | |||||||| || |||||| ||||||||  ||| |  |||||||| ||||||||||| |||| |||||||    
T  7073641 aaatagtcactttagtccttcattctgcagcttactgtcgcataggtctctgattcgggattaaatacaaataagtctctgattctgcac 7073730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 14704048 - 14704097
Alignment:
Q  214 cataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||||||| ||||| ||||||||| |||||||||||||| |||||||||    
T  14704048 cataggtccctgactcaggattaaatacaaataagtccctcactctgcac 14704097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 40000449 - 40000366
Alignment:
Q  180 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||||| |||||||| |||||| ||| |||| |||||| ||| ||| | ||||||||| ||||||||||| || || ||||||    
T  40000449 tcactttggtccctgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctctaaccctgcac 40000366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 5915113 - 5915024
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||||||| ||| |||||| ||| || ||| |||||||  ||||| || |||||| ||||| ||||| || |||||||||    
T  5915113 aaatagtcactttagtccatgactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtcactaactctgcac 5915024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 30748001 - 30748086
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||    
T  30748001 aaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctgactct 30748086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 31218963 - 31219046
Alignment:
Q  180 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||||| || |||| |||||| ||| ||||||||||||||| | ||| ||||||||| ||||| |||| |||||||||||||    
T  31218963 tcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagttcctgactctgcac 31219046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 31219275 - 31219197
Alignment:
Q  180 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactc 258  Q
    |||||||| ||||||| |||||| ||| ||||||||||||||  | ||| ||||||||| ||||| |||| ||||||||    
T  31219275 tcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagttcctgactc 31219197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 2592128 - 2592044
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactc 258  Q
    ||||| |||||||||||||| |||||||| ||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  2592128 aaatagtcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactc 2592044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 2591629 - 2591718
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||||||||||||||||||| ||  ||||||||||||||| ||||| ||||||||| ||||| ||||| ||||||||||||    
T  2591629 aaatagtcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtctctgactctgcac 2591718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 17702040 - 17701951
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||||||| ||||||||||| ||| |||||| |||||||| ||||| | ||||||| ||||||||||||||||||||||||    
T  17702040 aaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcac 17701951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 55388075 - 55388164
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||||||||||||||||||| ||| |||||| |||||||  ||||| ||||||||| ||||||||||  ||||||||||||    
T  55388075 aaatagtcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagttactgactctgcac 55388164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 17700515 - 17700609
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| ||||| |||||||||||  ||| |||||| |||  |||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||    
T  17700515 agagcaaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcac 17700609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 36278954 - 36279043
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||||||||||||| | || |||  |||||||||||||| ||| | ||||||||| ||||||||||| ||||||||||||    
T  36278954 aaatagtcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatacaaataagtctctgactctgcac 36279043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 52318438 - 52318349
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||| ||| |||| ||||||  || ||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||    
T  52318438 aaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcac 52318349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 52316976 - 52317070
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| ||||||||||||||||| ||||||||||| ||| |||||| |||||||  ||||| | ||||||| |||||||||||  | |||||||||    
T  52316976 agagcaaataatcactttagtctctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaataagtctttaactctgcac 52317070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 48572987 - 48573076
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||| |||||||| |||||| |||  | |||||||||||| ||||| ||||||||| ||||||||| | ||||||||||||    
T  48572987 aaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcac 48573076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 48808366 - 48808457
Alignment:
Q  174 aaataatcacttta--gtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||||||||||||  ||||||||||||||| ||| |||| | |||||||  ||||| ||||||||| |||||||||| ||| |||||||||    
T  48808366 aaataatcactttatagtccctgattctgcagctcgctgttagataggtctctgactcaggattaaatacaaataagttcctaactctgcac 48808457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 33428550 - 33428468
Alignment:
Q  180 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgca 262  Q
    ||||||| |||||||| |||||| |||  |||||||||||||| ||||| || |||||| ||||| |||||| ||||||||||    
T  33428550 tcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtccttgactctgca 33428468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 34263802 - 34263892
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    |||| ||||| ||||||| | |||||| |||||| ||| |||||||| |||||| ||| | ||||||||| ||||||||||| ||||||||    
T  34263802 agagcaaatagtcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctgactct 34263892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 53957672 - 53957765
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| ||||| |||||||||| | |||||||||||||| |||| |||||||| | ||||| |||| |||| |||||||||||  |||||||||||    
T  53957672 agagcaaatagtcactttagtacttgattctgcaactcgctgttacataggttcctgactcagga-taaatacaaataagtctatgactctgcac 53957765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 11773143 - 11773087
Alignment:
Q  203 actcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    |||| ||||||||||||||| ||||| ||||||||| ||||||||||| ||||||||    
T  11773143 actcgctgtcacataggtccctgactcaggattaaatacaaataagtctctgactct 11773087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 45601053 - 45600971
Alignment:
Q  180 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||||||||||||| ||||   ||| ||||||||||||||| ||| | ||||||||| ||||| |||| |||||||||||||    
T  45601053 tcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagt-cctgactctgcac 45600971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 48574538 - 48574491
Alignment:
Q  216 taggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||||||||    
T  48574538 taggtccctgactcaggattaaatacaaataagtccctgactctgcac 48574491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 20464078 - 20464160
Alignment:
Q  181 cactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||||||||| || |||||| |||  ||||||| |||||| || || | ||||||| ||||| ||||||||||||||||||    
T  20464078 cactttagtccccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgcac 20464160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 19331110 - 19331183
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataa 247  Q
    |||||| |||||| || ||||| |||||| ||  ||||||||||||||| ||||| ||||||||| ||||||||    
T  19331110 aaataaccactttcgttcctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataa 19331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 55389590 - 55389505
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    ||||| ||||||| |||||| | |||||| ||| ||||||||||||||  ||||| |  |||||| |||| |||||||||||||||    
T  55389590 aaatagtcactttggtccctaactctgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtccctgactct 55389505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 47118166 - 47118083
Alignment:
Q  180 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||||||||||||| |||||| |||  ||||| ||| ||||  |||| |||||||||  |||| ||||| ||||||||||||    
T  47118166 tcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctgactctgcac 47118083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 19114535 - 19114624
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| ||||||||||||||||| ||||||  ||  ||||||| |||||| ||||| | ||||||| ||||| ||||| || ||| |||||    
T  19114535 aaatgatcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcac 19114624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 19115267 - 19115179
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||||| | ||| |||||| |||  |||||||||||||| | ||| ||||||||| ||||| |||| | |||||||||||    
T  19115267 aaatagtcactttagttcgtgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagt-catgactctgcac 19115179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 47427882 - 47427951
Alignment:
Q  194 gattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| |||| ||| ||||||||||||||| ||||| |  |||||| ||||| |||||||||||| |||||    
T  47427882 gattgtgcacctcgctgtcacataggtccttgactcaaaattaaatacaaagaagtccctgactgtgcac 47427951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 36280401 - 36280349
Alignment:
Q  211 tcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||||||||  ||||| ||||||||| | ||||||||| ||||||||||||    
T  36280401 tcacataggtctctgactcaggattaaatataaataagtctctgactctgcac 36280349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 116057 - 116146
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||||| ||| |||||||| ||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||| |||||    
T  116057 aaatagtcactttagttcctcattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactatgcac 116146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 32665897 - 32665802
Alignment:
Q  168 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||  ||||| | ||||||| |||||||||||  |||||||||||    
T  32665897 aagagcaaatagtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgcac 32665802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 7944169 - 7944246
Alignment:
Q  186 tagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||||||||| |||||||| ||||||||||||||| ||||| |  |||||| |||||||||||| |||||||||||    
T  7944169 tagtccctgattttgcaactcgctgtcacataggtccctgactcaaaattaaatacaaataagtccttgactctgcac 7944246  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 7945675 - 7945586
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||||||| ||| |||||||| |||||| ||| ||||||||||||| | ||||| ||||||||| ||||||||||| |||||| |||||    
T  7945675 aaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcac 7945586  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 9339648 - 9339737
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| || |||||||||||||||||||| |||  ||| |||||||||| ||||| ||||||||| |||||||| |||| ||||||||||    
T  9339648 aaatagtccctttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatacaaataaatccccgactctgcac 9339737  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 10332983 - 10333077
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| ||||| |||||||||||||||| | |||| |||  |||||||||||||| ||| | ||||||||| | |||||||||||| |||||||||    
T  10332983 agagcaaatagtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtcccttactctgcac 10333077  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 9341125 - 9341057
Alignment:
Q  195 attctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||||| |||||| |||||||||||| ||||| ||||||||| ||||||||||| |||||| |||||    
T  9341125 attctgcatctcactatcacataggtccctgactcaggattaaatacaaataagtctctgactttgcac 9341057  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 10333307 - 10333218
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||| || || ||||||||||| ||| |||| |||||||||  ||||| | ||||||| ||||||||||| ||||||||||||    
T  10333307 aaatagtcactataatctctgattctgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctgactctgcac 10333218  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 52439476 - 52439557
Alignment:
Q  169 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtc 250  Q
    |||| ||||| ||||||||| ||||||||||||| ||| ||||||||||||||  || || ||||||||| ||| |||||||    
T  52439476 agagcaaatagtcactttagcccctgattctgcagctcgctgtcacataggtctctggctcaggattaaatacagataagtc 52439557  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 52440680 - 52440591
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||||||| || ||| |||| | ||||  || ||||||||||||||| ||| | ||||||||| | ||||||||| ||||||||||||    
T  52440680 aaataatcacattggtctctgactttgcacatcgctgtcacataggtccctgagtcaggattaaatataaataagtctctgactctgcac 52440591  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 5782409 - 5782497
Alignment:
Q  167 gaagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctga 255  Q
    |||||| ||||  ||| |||||||||||| |||||| ||| ||||||||||||||  ||||| | ||||||| ||||| ||||| ||||    
T  5782409 gaagagcaaattgtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctga 5782497  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 6612421 - 6612510
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||||||||||| |||||| ||| |||| | | | |||  ||||| | ||||||| ||||| ||||| ||||||||||||    
T  6612421 aaatagtcactttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctgactctgcac 6612510  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 42278051 - 42278140
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| |||||||||||| |||||||||| ||  ||||||||||||||| |||||  |||||||| |||||||||| |||||||||||||    
T  42278051 aaatagtcactttagtccttgattctgcagcttgctgtcacataggtccctgactcgggattaaatacaaataagttcctgactctgcac 42278140  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 47874566 - 47874655
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||||||||||| ||||||||||| ||| || |||||||||||| ||||| | ||||||| |||||||||||||||| |||||||    
T  47874566 aaatagtcactttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtccctgattctgcac 47874655  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 31844715 - 31844809
Alignment:
Q  165 ttgaagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    |||||||| ||||| ||||||||||||||   |||||| ||| ||||||||||||||| ||||| ||||||||| ||||| |||||||| |||||    
T  31844715 ttgaagagcaaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtccctaactct 31844809  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 53771164 - 53771081
Alignment:
Q  180 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||||||||||||| |||||| |||  |||||||||||||| ||||| || |||||| ||||| ||| ||||||||||||||    
T  53771164 tcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgcac 53771081  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 47878605 - 47878520
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    ||||| |||||||  ||||||| |||||| ||| |||| |||||||||| |||||  |||||||| ||||||||||||||||||||    
T  47878605 aaatagtcactttgatccctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactct 47878520  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 42392009 - 42391930
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccct 253  Q
    |||| |||||||||||| |||| || ||| ||||||||||||||||||  ||||| | ||||||| |||||| |||||||    
T  42392009 aaatgatcactttagtctctgactccgcacctcactgtcacataggtctctgactcatgattaaatacaaattagtccct 42391930  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 26173062 - 26172974
Alignment:
Q  175 aataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||| |||||||||||||  | | |||| || ||||||| | |||||| ||||| | ||||||| ||||||||||| ||||||||||||    
T  26173062 aatagtcactttagtccccaactatgcaccttactgtcagaaaggtccttgactcaagattaaatacaaataagtctctgactctgcac 26172974  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 54574450 - 54574516
Alignment:
Q  197 tctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    |||||| ||| ||||||||||||||  ||||| ||||||||| |||||||||| | | |||||||||    
T  54574450 tctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagttcttaactctgcac 54574516  T

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Target: scaffold0039 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 74433 - 74349
Alignment:
Q  175 aataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactct 259  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||| | ||| | ||||||| ||||| |||||| |||||||    
T  74433 aatagtcagtttagtccctgactctgcaactcactgtcacataggtccctaactcatgattaaatacaaagaagtccttgactct 74349  T

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Target: scaffold0039; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 79075 - 79164
Alignment:
Q  174 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcac 263  Q
    ||||| ||| |||||| ||||| |||||| ||| ||||||||||||||| ||||| | ||||||| | ||| |||||| ||||| |||||    
T  79075 aaatagtcaatttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtccttgactttgcac 79164  T

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