View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6223_high_6 (Length: 218)
Name: NF6223_high_6
Description: NF6223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6223_high_6 |
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| [»] scaffold1749 (1 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 6473098 - 6473287
Alignment:
| Q |
13 |
catcatagaaaataggtagaacagtttgtccttgtacatggatacaatcagcaatatttgccaattcttgcaagcaccatgtggaagaagcatagttttt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6473098 |
catcatagaaaataggtagaacagtttgtccttgtacatggatgcaatcagcaatatttaccaattcttgcaagcaccatgtggaagaagcatagttttt |
6473197 |
T |
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| Q |
113 |
tgagaaaattacaatcaagatatgagattcttttatagcttgtagaagctcagatgatatatttcccccttttctgacgtttatatcatc |
202 |
Q |
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| T |
6473198 |
tgagaaaattacaatcaagatatgagattcttttatagcttgtaggagctcagatgatatgtttccccctttttttaggtttatatcatc |
6473287 |
T |
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Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 13608550 - 13608360
Alignment:
| Q |
13 |
catcatagaaaataggtagaacagtttgtccttgtacatggatacaatcagcaatatttgccaattcttgcaagcaccatgtggaagaagcatagttttt |
112 |
Q |
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| T |
13608550 |
catcatagaaaataggtagaacagtttgtcctgatacttcaaagtattcagcaatttttgccagttcttgtaagcaccatgtggaagaagcatagtttct |
13608451 |
T |
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| Q |
113 |
tgagaaaattacaatcaagatatgagattcttttatagcttgtagaagctcagatgatatatttcccccttttctgacgtttatatcatct |
203 |
Q |
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| T |
13608450 |
tgagaagataacaatcaaaatatgggatccttcaatggcttgttcaagcttggatgatatatgttcccctttttttaggtttgtatcatct |
13608360 |
T |
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Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 31244529 - 31244358
Alignment:
| Q |
13 |
catcatagaaaataggtagaacagtttgtccttgtacatggatacaatcagcaatatttgccaattcttgcaagcaccatgtggaagaagcatagttttt |
112 |
Q |
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| T |
31244529 |
catcatagaaaataggtagaacaatttgtcctgttacttcaatgcattcagcaatctttactagttccttcaagcaccacgttgaagaagcatagttcct |
31244430 |
T |
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| Q |
113 |
tgagaaaattacaatcaagatatgagattcttttatagcttgtagaagctcagatgatatatttcccccttt |
184 |
Q |
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| T |
31244429 |
tgaaaagataacaatcaaaatacgggatccttcaatagcttgtagaagctcagatgatatattttccccttt |
31244358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 31159937 - 31159991
Alignment:
| Q |
73 |
ccaattcttgcaagcaccatgtggaagaagcatagttttttgagaaaattacaat |
127 |
Q |
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| T |
31159937 |
ccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaat |
31159991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 17599814 - 17599843
Alignment:
| Q |
15 |
tcatagaaaataggtagaacagtttgtcct |
44 |
Q |
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| T |
17599814 |
tcatagaaaataggtagaacagtttgtcct |
17599843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 812 - 852
Alignment:
| Q |
75 |
aattcttgcaagcaccatgtggaagaagcatagttttttga |
115 |
Q |
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| T |
812 |
aattcttgcaggcaccatgttgaagaagcatagtttcttga |
852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 9573 - 9613
Alignment:
| Q |
75 |
aattcttgcaagcaccatgtggaagaagcatagttttttga |
115 |
Q |
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|||||||||| ||||||||| ||||||||||||||| |||| |
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| T |
9573 |
aattcttgcaggcaccatgttgaagaagcatagtttcttga |
9613 |
T |
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