View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6223_low_1 (Length: 393)
Name: NF6223_low_1
Description: NF6223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6223_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 15673443 - 15673064
Alignment:
| Q |
1 |
aattttgtttatgagttacaggtgttcagatataccgttttgtgtcttggctgacattataagtgttgtcgactgcataacaaggaacaatgacggttag |
100 |
Q |
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| T |
15673443 |
aattttgtttatgagttacaggtgtttagacataccgttttctgtcttggctgacattataagtgttgtcgactgcataacaaggaacaatgacggttaa |
15673344 |
T |
|
| Q |
101 |
ctaccgccgaagacgtttttgtatttttgaagtgtctgaaagacattttgaaagtgaaaaggagcaattttccaagacaaaatagcctatcatcattggt |
200 |
Q |
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| T |
15673343 |
ctaccgccgaagacgtttttgtatttttgaagtgtctcaaagacattttgaaagtgaaaaagagcaattttccaagacaaaatagcctatcatcattggt |
15673244 |
T |
|
| Q |
201 |
ttttgctgggccaatccagctcgagtagtcccttaattacgatggtatatggaccctcgaaattgtactcctgctcccatattttgctaaaaatgatcag |
300 |
Q |
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| T |
15673243 |
ttttgctgggccaatccagctcgagtagtcacttaattacgatgatatatggaccctcgaaattgtactcctgcccccatattttgctaaaaatgatcag |
15673144 |
T |
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| Q |
301 |
tttaccctcttgatacatgaa-----------tgtttttgctaaaccttcgcataaccctatgagggctcttgataccaa |
369 |
Q |
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| T |
15673143 |
tttaccctcttgatacatgaatgttacatgaatgtttttgccaaaccttcacataaccctatgagggctcttgataccaa |
15673064 |
T |
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