View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6223_low_3 (Length: 299)
Name: NF6223_low_3
Description: NF6223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6223_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 53 - 281
Target Start/End: Original strand, 44027305 - 44027533
Alignment:
| Q |
53 |
ctcctcaaccttagaagatgctccaactagatagattacaagaaaatgaaaaatctaagtgcgagtagcacaatttttaaaaaggatcttgatttttgac |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44027305 |
ctcctcaaccttagaagatgctccaactagatagattacaagaaaatgaaaaatctaagtgcgagtagcacaatttttaaaaaggatcttgatttttggc |
44027404 |
T |
|
| Q |
153 |
gatcaaagaatcacacatttgacacaattaacaattttgaccatcaaatcaaaatcaacaggctagagttccaaccttgtaaatcaaatccaaaacacaa |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44027405 |
gatcaaagaatcacacatttgacacaatcaacaattttgaccatcaaatcaaaatcaacaggctagagttccaaccttgtaaatcaaatccaaaacacaa |
44027504 |
T |
|
| Q |
253 |
gtttaaaatatgcaccgctaaattatgat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44027505 |
gtttaaaatatgcaccgctaaattatgat |
44027533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 53 - 281
Target Start/End: Complemental strand, 43293656 - 43293428
Alignment:
| Q |
53 |
ctcctcaaccttagaagatgctccaactagatagattacaagaaaatgaaaaatctaagtgcgagtagcacaatttttaaaaaggatcttgatttttgac |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43293656 |
ctcctcaaccttagaagatgctccaactagatagattacaagaaaatgaaaaatctaagtgcgagtagcacaatttttaaaaaggatcttgatttttggc |
43293557 |
T |
|
| Q |
153 |
gatcaaagaatcacacatttgacacaattaacaattttgaccatcaaatcaaaatcaacaggctagagttccaaccttgtaaatcaaatccaaaacacaa |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43293556 |
gatcaaagaatcacacatttgacacaatcaacaattttgaccatcaaatcaaaatcaacaggctagagttccaaccttgtaaatcaaattcaaaacacaa |
43293457 |
T |
|
| Q |
253 |
gtttaaaatatgcaccgctaaattatgat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43293456 |
gtttaaaatatgcaccgctaaattatgat |
43293428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University