View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6223_low_5 (Length: 257)
Name: NF6223_low_5
Description: NF6223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6223_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 17116050 - 17116286
Alignment:
| Q |
13 |
tcatcatttggtacctagtggaggctatattgctaggctgctagctcttgattctcgtattgtttttattgttcatgttccttcaacgatatatgtgtgg |
112 |
Q |
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| T |
17116050 |
tcatcatttggtacctaatggaggctatattgctaggctgctagctcttgattctcgtattgtttttattgttcatgttccttcaacgatatatgtgtgg |
17116149 |
T |
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| Q |
113 |
attggtaaaatttctaattctttgtatttgtgaagatgaagagccaatggagctttgggttgatattttcaatcaacaactattattggggagttctcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |
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| T |
17116150 |
attggtaaaatttctaattctttgtatttgtgaagatgaagagccaatggagctttgggttgatgtttccaatcaacaactattgttggggagttctcat |
17116249 |
T |
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| Q |
213 |
aagggagaataatgattgagtagaaagatgatgatgt |
249 |
Q |
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| T |
17116250 |
aagggagaataatgattgaggagaaagatgatgatgt |
17116286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 50071764 - 50071529
Alignment:
| Q |
13 |
tcatcatttggtacctagtggaggctatattgctaggctgctagctcttgattctcgtattgtttttattgttcatgttccttcaacgatatatgtgtgg |
112 |
Q |
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| T |
50071764 |
tcatcattcggtacctaatgaaggatatattgctaggctgctagctcttgattctcgtattgtttttattgttcatgttccttcaacgatatatgtgtgg |
50071665 |
T |
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| Q |
113 |
attggtaaaatttctaattctttgtatttgtgaagatgaagagccaatggagctttgggttgatattttcaatcaacaactattattggggagttctcat |
212 |
Q |
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| T |
50071664 |
attggtaaaatttctaattctttgtatttgtgaagatgaagagccaatggagctttgggttgctatttccaatcaacaactattgttggggagttctcat |
50071565 |
T |
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| Q |
213 |
aagggagaataatgattgagtagaaagatgatgatgt |
249 |
Q |
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| T |
50071564 |
aagggagaataatga-tgtggagaaagatgatgatgt |
50071529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 37347785 - 37347872
Alignment:
| Q |
128 |
aattctttgtatttgtgaagatgaagagccaatggagctttgggttgatattttcaatcaacaactattattggggagttctcataag |
215 |
Q |
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| T |
37347785 |
aattctttgcatttgtgaagatgaagagccaatggagttttgggttgctctttctaaccagcaattattgttggggagttctgataag |
37347872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 48621612 - 48621658
Alignment:
| Q |
128 |
aattctttgtatttgtgaagatgaagagccaatggagctttgggttg |
174 |
Q |
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| T |
48621612 |
aattctttgcatttgtgaagatcaagagccaatggagtttttggttg |
48621658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 39220435 - 39220504
Alignment:
| Q |
53 |
ctagctcttgattctcgtattgtttttattgttcatgttccttcaacgatatatgtgtggattggtaaaa |
122 |
Q |
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||||| |||||||| ||| || ||||||||||||||||||||| | || |||||||||||||| |||| |
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| T |
39220435 |
ctagcacttgattcgcgtggtgcttttattgttcatgttccttctgctatctatgtgtggattgggaaaa |
39220504 |
T |
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